Non-Coding RNA Search

Ss1.1-Pig1-4L10.5

Sequence:


               
               GGCTCCGCAGCAGTATCTGATTTTAGGTTAACGGCGTCTTTCAGCAGATGTGCTTCCCAC
CTGAACCTCAGGAGCCAGGTTCCAAGGAGACGAGGTCACTGTCTCACCGGGAACCTTCCC
CAGGAAGGCGGCACTTTCCCCTCCTGGAGGCGGCCGGCCGGTGCCCCTTCCCCGCGCCCC
CTTTGCCTGCCCTCTTCTCGGCTCGCCCCTCTAAGTTTGTGGGGTTGCCCCTTTCTACGG
TACTCACTTAGGCTTCCTGCCGCCTGACTGCACTACCCGTGAGCTCTCTCACAATTCTTT
TTCTTTTTTCTCAAGCTTAATTGAAGTTTTAGAAGGTGAAATAATGTCTGGATAAAACAT
GATGACATTTGGCAGTTTTAGGACGTGGGATACGTGGCAATGTCTTGGGGTAAGAAATCC
ATCAGGAAAGAATGTGTTTTCCTTTGGGACCAAAAGAAAACAAATGCAGACTCTGAACCA
CTTGATGATTTTCAGACGGACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCCGCAGCAGTATCTGATTTTAGGTTAACGGCGTCTTTCAGCAGATGTGCTTCCCAC
CTGAACCTCAGGAGCCAGGTTCCAAGGAGACGAGGTCACTGTCTCACCGGGAACCTTCCC
CAGGAAGGCGGCACTTTCCCCTCCTGGAGGCGGCCGGCCGGTGCCCCTTCCCCGCGCCCC
CTTTGCCTGCCCTCTTCTCGGCTCGCCCCTCTAAGTTTGTGGGGTTGCCCCTTTCTACGG
TACTCACTTAGGCTTCCTGCCGCCTGACTGCACTACCCGTGAGCTCTCTCACAATTCTTT
TTCTTTTTTCTCAAGCTTAATTGAAGTTTTAGAAGGTGAAATAATGTCTGGATAAAACAT
GATGACATTTGGCAGTTTTAGGACGTGGGATACGTGGCAATGTCTTGGGGTAAGAAATCC
ATCAGGAAAGAATGTGTTTTCCTTTGGGACCAAAAGAAAACAAATGCAGACTCTGAACCA
CTTGATGATTTTCAGACGGACTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               383-499, - strand, RNAz p=0.678373

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-499, - strand, RNAz p=0.678373

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-504, gnl|bosTau2|chr5 (4312131-4312630)
               

               
               9-504, gnl|Hg17|chr12 (75761128-75760250)
               

               
               9-504, gnl|Mm7|chr10 (110394134-110394690)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-504, gnl|bosTau2|chr5 (4312131-4312630)
               

               
               9-504, gnl|Hg17|chr12 (75761128-75760250)
               

               
               9-504, gnl|Mm7|chr10 (110394134-110394690)

	9-504, gnl\|bosTau2\|chr5 (4312131-4312630)
	9-504, gnl\|Hg17\|chr12 (75761128-75760250)
	9-504, gnl\|Mm7\|chr10 (110394134-110394690)