Non-Coding RNA Search

Ss1.1-Pig1-4L17.5

Sequence:


               
               GGGGACTGTCCGTCACAGGTTGCTGAAGTTAAGGGAGGTTCAGCCTCCATAATAAAGAGA
CCCTACAGTATGGTGGCTCAAACCCAGTGCAAGTTTATTTCTTGCACATGTAAGAGTCCC
GGATGAGCCCTGAGGTCTGCCATTCCTCGGGGCTTGTCATCTCCACGCAGCCAGTGGAGG
GGTCCAGCACAGAAGAGAGCAGACTGGCCCAGGAGGGGCCCGTGAGCCACATCACGGGGC
CACACCTCACAGCAGAGGAGGCTGGGTGAGTAACAGGTGTGCGTCCAGAAAGGGGAAACC
GGGTAAACAGCTCATCATTGCCATTAACCACCCATTACTCATGTTCAAAAACAGAATGGT
TGATAAAAAATAAATCATGCTGCAGGCTCATCCTGATGTAGCAGGTTCACAGCAGAATTG
TTTGCCCTCCCTCCATTCTGTAAAGGTGAGAAGCTGGTGCCCGGGGCCAGAGAGGTGCTG
ACGGAGATATTTAAGAGCTGCGCCCACTCAGAGCAGATGCTGAGCCTGACGCCAGCAAAG
CCCATCAAAGTGTCTGACATTTATCTTAGCAAAGAGCAGATCAACTCCCAGACACCAGGC
AACCTCCTCCACCTCTTCTTCACCAATGTCCGGCCCCCTAAAAGGTGCTGGAGGACCAGC
TCACCCAGATCCTGAGGAAGTACGGCGTGCCGAAGCCCAAGTTCGACAAGAGCAAGTACA
GCAAGGCTGGGAAGGAGCAGCACCCAGGGAAGGTGGTGAGCACCAAGCGGCCCATCACCA
AGCCGCCTGCCAAGGACAAGGCTGTGCTCAACAGCGTCAGGACTGCCTTGAGTGAGAAGA
AGCCCACTGTGAAGCCAAAGTCACCGGAAAAGAGCAAGCCAGACGAAAAGGACCCAGAGA
AGTCACCCACCAAAAAACAAGAAGTCCCTGAGGAAAAGTACCTGACCTTGGAAGGATTTC
ACAAGTTTGTTATTGACCGGGCCAAGCAAGACATCCGTAGTGTCTGGAGGGCGATTTTAT
CCTGTGGTTACGATCTTCATTTTGAGAGGTGCGCCTGCATCGACGTCCGGCACGCACATA
AGGCCTCCAGGAAGTGGACTCTGGAGATGGACGTGGCGCTCGTGCAGTACATCAACCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGACTGTCCGTCACAGGTTGCTGAAGTTAAGGGAGGTTCAGCCTCCATAATAAAGAGA
CCCTACAGTATGGTGGCTCAAACCCAGTGCAAGTTTATTTCTTGCACATGTAAGAGTCCC
GGATGAGCCCTGAGGTCTGCCATTCCTCGGGGCTTGTCATCTCCACGCAGCCAGTGGAGG
GGTCCAGCACAGAAGAGAGCAGACTGGCCCAGGAGGGGCCCGTGAGCCACATCACGGGGC
CACACCTCACAGCAGAGGAGGCTGGGTGAGTAACAGGTGTGCGTCCAGAAAGGGGAAACC
GGGTAAACAGCTCATCATTGCCATTAACCACCCATTACTCATGTTCAAAAACAGAATGGT
TGATAAAAAATAAATCATGCTGCAGGCTCATCCTGATGTAGCAGGTTCACAGCAGAATTG
TTTGCCCTCCCTCCATTCTGTAAAGGTGAGAAGCTGGTGCCCGGGGCCAGAGAGGTGCTG
ACGGAGATATTTAAGAGCTGCGCCCACTCAGAGCAGATGCTGAGCCTGACGCCAGCAAAG
CCCATCAAAGTGTCTGACATTTATCTTAGCAAAGAGCAGATCAACTCCCAGACACCAGGC
AACCTCCTCCACCTCTTCTTCACCAATGTCCGGCCCCCTAAAAGGTGCTGGAGGACCAGC
TCACCCAGATCCTGAGGAAGTACGGCGTGCCGAAGCCCAAGTTCGACAAGAGCAAGTACA
GCAAGGCTGGGAAGGAGCAGCACCCAGGGAAGGTGGTGAGCACCAAGCGGCCCATCACCA
AGCCGCCTGCCAAGGACAAGGCTGTGCTCAACAGCGTCAGGACTGCCTTGAGTGAGAAGA
AGCCCACTGTGAAGCCAAAGTCACCGGAAAAGAGCAAGCCAGACGAAAAGGACCCAGAGA
AGTCACCCACCAAAAAACAAGAAGTCCCTGAGGAAAAGTACCTGACCTTGGAAGGATTTC
ACAAGTTTGTTATTGACCGGGCCAAGCAAGACATCCGTAGTGTCTGGAGGGCGATTTTAT
CCTGTGGTTACGATCTTCATTTTGAGAGGTGCGCCTGCATCGACGTCCGGCACGCACATA
AGGCCTCCAGGAAGTGGACTCTGGAGATGGACGTGGCGCTCGTGCAGTACATCAACCGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               487-606, - strand, RNAz p=0.541086

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               487-606, - strand, RNAz p=0.541086

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-668, gnl|bosTau2|chr17 (37003842-37003166)
               

               
               1-668, gnl|Hg17|chr12 (111080347-111079698)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-668, gnl|bosTau2|chr17 (37003842-37003166)
               

               
               1-668, gnl|Hg17|chr12 (111080347-111079698)

	1-668, gnl\|bosTau2\|chr17 (37003842-37003166)
	1-668, gnl\|Hg17\|chr12 (111080347-111079698)