Non-Coding RNA Search

Ss1.1-Pig1-4M21.5

Sequence:


               
               TGTCCCAGCAGTGCTTGCCCGACGGCTCGCTCCGTGTGCTGCCGCAGCAGCTGCCCGACC
TCCTGGGCCTCAGCCAGGAGCTGCTGCTGAAGCTGCAGCCGCATTTGCTGCGCCTCCTCC
TCCAGCCGGCTAGCCTCCTCCAGGACGCGGGCCTCCAAGGCTCTGAGCAGCTGCCACTGA
TGCTCGTCCAGACACTGGGAGGAGCCCTGCTCCAGGGCGTGCTGTTCACGCAGCTCCTGG
AGAAGGCTCTTCTTTCCCGACAGCCTCATCTGTGTCAGGGTGGTGATGGCACTGCCGCGG
AGGGCCAGCCTCCGGAGAGCGGAGCACAGGAGCAGCTCATGGCCCTGTAGGATGCCCTGC
GTGGACTCTTCACTGAGCCCGCCAAGTTGGTCCAAGACTTGGTGGATGATGCTCTCATGG
TCATCCTGCAGGTGTGTCTGCAGCACAGTTGACAGTGTATGTTCCTCCATCCACACCTGC
TTTTCTTGCTCCTGGAGATCTTGGAAGAGTTTCCACTGCTGACTCCGGAAGCGATCCGAC
TTCCCCAGCTGCAGGGCTGCGTTCTCCTGGGCCTCCTGCTTCAGGTACTCACACTCAGCC
TGGGAGAGGCCGGTCACACGGGGGAGCGTCTGAAGGAACAAGACGTCCACGAACTTCTGG
AACGTATCCATGGCGCTGCGGTACAGCTCCTGGCAGAGCGTGGCCACGGCCTGGGTGGCT
CCGACGTCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCCAGCAGTGCTTGCCCGACGGCTCGCTCCGTGTGCTGCCGCAGCAGCTGCCCGACC
TCCTGGGCCTCAGCCAGGAGCTGCTGCTGAAGCTGCAGCCGCATTTGCTGCGCCTCCTCC
TCCAGCCGGCTAGCCTCCTCCAGGACGCGGGCCTCCAAGGCTCTGAGCAGCTGCCACTGA
TGCTCGTCCAGACACTGGGAGGAGCCCTGCTCCAGGGCGTGCTGTTCACGCAGCTCCTGG
AGAAGGCTCTTCTTTCCCGACAGCCTCATCTGTGTCAGGGTGGTGATGGCACTGCCGCGG
AGGGCCAGCCTCCGGAGAGCGGAGCACAGGAGCAGCTCATGGCCCTGTAGGATGCCCTGC
GTGGACTCTTCACTGAGCCCGCCAAGTTGGTCCAAGACTTGGTGGATGATGCTCTCATGG
TCATCCTGCAGGTGTGTCTGCAGCACAGTTGACAGTGTATGTTCCTCCATCCACACCTGC
TTTTCTTGCTCCTGGAGATCTTGGAAGAGTTTCCACTGCTGACTCCGGAAGCGATCCGAC
TTCCCCAGCTGCAGGGCTGCGTTCTCCTGGGCCTCCTGCTTCAGGTACTCACACTCAGCC
TGGGAGAGGCCGGTCACACGGGGGAGCGTCTGAAGGAACAAGACGTCCACGAACTTCTGG
AACGTATCCATGGCGCTGCGGTACAGCTCCTGGCAGAGCGTGGCCACGGCCTGGGTGGCT
CCGACGTCCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-156, - strand, RNAz p=0.75398

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, - strand, RNAz p=0.75398

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-156, gnl|bosTau2|chr6 (60604345-60604500)
               

               
               1-156, gnl|Hg17|chr4 (5918539-5918384)
               

               
               1-156, gnl|Mm7|chr5 (36391607-36391762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr6 (60604345-60604500)
               

               
               1-156, gnl|Hg17|chr4 (5918539-5918384)
               

               
               1-156, gnl|Mm7|chr5 (36391607-36391762)

	1-156, gnl\|bosTau2\|chr6 (60604345-60604500)
	1-156, gnl\|Hg17\|chr4 (5918539-5918384)
	1-156, gnl\|Mm7\|chr5 (36391607-36391762)