Non-Coding RNA Search

Ss1.1-Pig1-51K08.5

Sequence:


               
               GTACCACCTCCTTGTGGAGGAGAAACTGTGCCCCGCCTCTATGCGGGAGGAGGCCTACGG
GGCAGCCCTCCGGGCTTTCCGCTCCAGGGACGACCACCAGCTGGGGGAGCTCCAGGAAGA
GGCCCGGGACCGATGCGGGTGGGACATCCTTAGGGACATGGAGGACGTCCAGGCTCTCCG
ATCCGATCTGGGCTGCCCCCGGCTGTCCTCAGCATTGCCCTCTCCGCCGCGCAGCCATCC
GCGGCCCATCGAAGACCTTTCTGGCTGGAGCAGAGGGCATTCCCTGAGGTCCACTGGCAG
CCCGGCTTCCCTGGCCAGCAACTTGGAAATTAGCCAGTCGCCCACCATGGCGCTCCTCAG
CCTGCACCACAGTCCCCATGGGCCCAGCAAGCTGTGTGACGAGCCCCGGGCCAGTCCGGT
CCCCGAGCCTGCCCCTATGGGCTGCCAGGAACCCGAGGAGATGAGCTGGCCCCCATCGGT
GGAGGGTGCCAACTCTCCGGTGCAGTCAAACAGCCCAGTCCCCAGGGATCTCGAGGTGGC
GGCAGATGCAAGCCCCGCTAGCCTGCCTGAAGCCCCCGAAGCTCCAGAAACCAGCACACA
CTACCCGGTGGAGTGCACAGAAGAGCCCGCCGCCCCCAAATCTCTCCCTTCGCCCTCCAG
AAACGCCTCTCCTGACGTCACAGACCAGAAGCCGCCCCTCCACCTTTCAGAAGAAGATAC
CACTTACCCCACAGCCCAGCCACACCCACCGACTCCATCGGTACCGCAGACGTCCCCTCC
CTTTCCTTCTCCGTCGACCCTTTCTTCAGCTCCCCCGACCGTCTCCAACCCAAGTCCCCC
TGCTCCCGAGCTGGAGTTATCGGAACAGAAATTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACCACCTCCTTGTGGAGGAGAAACTGTGCCCCGCCTCTATGCGGGAGGAGGCCTACGG
GGCAGCCCTCCGGGCTTTCCGCTCCAGGGACGACCACCAGCTGGGGGAGCTCCAGGAAGA
GGCCCGGGACCGATGCGGGTGGGACATCCTTAGGGACATGGAGGACGTCCAGGCTCTCCG
ATCCGATCTGGGCTGCCCCCGGCTGTCCTCAGCATTGCCCTCTCCGCCGCGCAGCCATCC
GCGGCCCATCGAAGACCTTTCTGGCTGGAGCAGAGGGCATTCCCTGAGGTCCACTGGCAG
CCCGGCTTCCCTGGCCAGCAACTTGGAAATTAGCCAGTCGCCCACCATGGCGCTCCTCAG
CCTGCACCACAGTCCCCATGGGCCCAGCAAGCTGTGTGACGAGCCCCGGGCCAGTCCGGT
CCCCGAGCCTGCCCCTATGGGCTGCCAGGAACCCGAGGAGATGAGCTGGCCCCCATCGGT
GGAGGGTGCCAACTCTCCGGTGCAGTCAAACAGCCCAGTCCCCAGGGATCTCGAGGTGGC
GGCAGATGCAAGCCCCGCTAGCCTGCCTGAAGCCCCCGAAGCTCCAGAAACCAGCACACA
CTACCCGGTGGAGTGCACAGAAGAGCCCGCCGCCCCCAAATCTCTCCCTTCGCCCTCCAG
AAACGCCTCTCCTGACGTCACAGACCAGAAGCCGCCCCTCCACCTTTCAGAAGAAGATAC
CACTTACCCCACAGCCCAGCCACACCCACCGACTCCATCGGTACCGCAGACGTCCCCTCC
CTTTCCTTCTCCGTCGACCCTTTCTTCAGCTCCCCCGACCGTCTCCAACCCAAGTCCCCC
TGCTCCCGAGCTGGAGTTATCGGAACAGAAATTCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               400-559, - strand, RNAz p=0.877554

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-559, - strand, RNAz p=0.877554

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               433-548, - strand, RNAmicro p=0.999178
               

               
               434-526, + strand, RNAmicro p=0.977669

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               433-548, - strand, RNAmicro p=0.999178
               

               
               434-526, + strand, RNAmicro p=0.977669

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-798, gnl|bosTau2|chr7 (14827653-14828444)
               

               
               1-798, gnl|Hg17|chr19 (4769093-4768303)
               

               
               1-798, gnl|Mm7|chr17 (54430046-54429312)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-798, gnl|bosTau2|chr7 (14827653-14828444)
               

               
               1-798, gnl|Hg17|chr19 (4769093-4768303)
               

               
               1-798, gnl|Mm7|chr17 (54430046-54429312)

	433-548, - strand, RNAmicro p=0.999178
	434-526, + strand, RNAmicro p=0.977669

	1-798, gnl\|bosTau2\|chr7 (14827653-14828444)
	1-798, gnl\|Hg17\|chr19 (4769093-4768303)
	1-798, gnl\|Mm7\|chr17 (54430046-54429312)