Non-Coding RNA Search

Ss1.1-Pig1-51M03.5

Sequence:


               
               GCGGACGCGTGGGTTTTTTTTAAGTACAGGAAAAAAATTCCACAGCAATAAACTGGGGTA
CATTAACCACTTGGGGATTATTTCAAAGTGAAAGGACATTTACTGGGTTCATCTGACCTC
TGATTTGAGGATCCGTTTTTTAAAAACACTACCAACCACAGACTTGTAAAGTTTGCAGAA
ACTGCCGACAGACCCAAATACGTTAAAGGCTGTAATCTCCTGAAAGGAGTTGGTTGATTT
TCCTGTTGCCCCTCCTATCAACTTTAACCTCCAACCTTCTCCGGCATGTATCACTGCAAA
TAAAACTGCTGAGGTTTGACAAGAGGATATAAAGTCATTAGGTCATCGCGCAGGGCTGGC
CACATGATTTTCTTCAACCTGAAACGAATGTTCTGTAATTTGGGCTTTTCAATAGGAAGT
CATAAACAGTCACTCATATCGCTTTAGTTTTAATAATTACAGGTTTAACCAAAAAAAAAC
AGAAAAACAGGTATATACATATTAAATGATGTTTGACAACTGGAATTTAGTGGTTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGTTTTTTTTAAGTACAGGAAAAAAATTCCACAGCAATAAACTGGGGTA
CATTAACCACTTGGGGATTATTTCAAAGTGAAAGGACATTTACTGGGTTCATCTGACCTC
TGATTTGAGGATCCGTTTTTTAAAAACACTACCAACCACAGACTTGTAAAGTTTGCAGAA
ACTGCCGACAGACCCAAATACGTTAAAGGCTGTAATCTCCTGAAAGGAGTTGGTTGATTT
TCCTGTTGCCCCTCCTATCAACTTTAACCTCCAACCTTCTCCGGCATGTATCACTGCAAA
TAAAACTGCTGAGGTTTGACAAGAGGATATAAAGTCATTAGGTCATCGCGCAGGGCTGGC
CACATGATTTTCTTCAACCTGAAACGAATGTTCTGTAATTTGGGCTTTTCAATAGGAAGT
CATAAACAGTCACTCATATCGCTTTAGTTTTAATAATTACAGGTTTAACCAAAAAAAAAC
AGAAAAACAGGTATATACATATTAAATGATGTTTGACAACTGGAATTTAGTGGTTTTGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               172-331, - strand, RNAz p=0.963457

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-331, - strand, RNAz p=0.963457

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               29-540, gnl|bosTau2|chr10 (18371358-18371865)
               

               
               29-540, gnl|Hg17|chr15 (34828166-34828666)
               

               
               29-540, gnl|Mm7|chr2 (115458778-115459264)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-540, gnl|bosTau2|chr10 (18371358-18371865)
               

               
               29-540, gnl|Hg17|chr15 (34828166-34828666)
               

               
               29-540, gnl|Mm7|chr2 (115458778-115459264)

	29-540, gnl\|bosTau2\|chr10 (18371358-18371865)
	29-540, gnl\|Hg17\|chr15 (34828166-34828666)
	29-540, gnl\|Mm7\|chr2 (115458778-115459264)