Non-Coding RNA Search

Ss1.1-Pig1-51N06.5

Sequence:


               
               AACAGAGCCGACAGCACCGGCCGGAGCGGAGTACCGCGCGTCCCCCCACCCGCGAGGCCA
GACAGCTGACCACGTCAGTGTGGGAGCCTGTGTTCCCGGTGGTGGTGGTTCCAGAGCGAT
GGAGGCACCTCTGCAGACGGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGAGGG
GCTGCTCCCAGTCACCGCCCCCATGGCTGGCAACCAGAGGGTCGAGGGCCCCGGACGGAG
CTGTGTTGAGGGTGAGGGCTTCCTACAGAAAAGCCCCAGCAAGGAGCCGCACTTCACCGA
TTTCGAGGGGAAGACATCATTCGGTATGTCAGTGTTCAACCTTAGCAACGCCATCATGGG
CAGCGGCATCCTGGGGCTCGCCTACGCCATGGCCAATACAGGCATCATCCTTTTCCTCTT
CCTGTTGACGGCCGTCGCCCTGCTCTCCAGCTACTCCATCCACCTGCTACTCAAGTCCTC
AGGGATCGTGGGCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGGACCCCAGG
AAAGCTGGCAGCAGCCCTGGCCATCACGCTACAGAACATCGGAGCCATGTCCAGCTACCT
GTACATCATCAAGTCTGAGCTGCCCCTCGTCATACAGACCTTCCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGAGCCGACAGCACCGGCCGGAGCGGAGTACCGCGCGTCCCCCCACCCGCGAGGCCA
GACAGCTGACCACGTCAGTGTGGGAGCCTGTGTTCCCGGTGGTGGTGGTTCCAGAGCGAT
GGAGGCACCTCTGCAGACGGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGAGGG
GCTGCTCCCAGTCACCGCCCCCATGGCTGGCAACCAGAGGGTCGAGGGCCCCGGACGGAG
CTGTGTTGAGGGTGAGGGCTTCCTACAGAAAAGCCCCAGCAAGGAGCCGCACTTCACCGA
TTTCGAGGGGAAGACATCATTCGGTATGTCAGTGTTCAACCTTAGCAACGCCATCATGGG
CAGCGGCATCCTGGGGCTCGCCTACGCCATGGCCAATACAGGCATCATCCTTTTCCTCTT
CCTGTTGACGGCCGTCGCCCTGCTCTCCAGCTACTCCATCCACCTGCTACTCAAGTCCTC
AGGGATCGTGGGCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGGACCCCAGG
AAAGCTGGCAGCAGCCCTGGCCATCACGCTACAGAACATCGGAGCCATGTCCAGCTACCT
GTACATCATCAAGTCTGAGCTGCCCCTCGTCATACAGACCTTCCTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61821185|ref|XP_587351.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61821185|ref|XP_587351.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-220, - strand, RNAz p=0.818097

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-220, - strand, RNAz p=0.818097

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               60-220, gnl|bosTau2|chr22 (38460304-38460463)
               

               
               60-220, gnl|canFam2|chr20 (42115131-42114775)
               

               
               60-220, gnl|echTel1|scaffold_268741 (3162-3483)
               

               
               60-220, gnl|hg17|chr3 (50226333-50226699)
               

               
               60-220, gnl|Hg17|chr3 (50226584-50226738)
               

               
               60-220, gnl|mm7|chr9 (107388886-107388582)
               

               
               60-220, gnl|Mm7|chr9 (107388693-107388541)
               

               
               60-220, gnl|monDom2|scaffold_5 (74249119-74248755)
               

               
               60-220, gnl|oryCun1|scaffold_210732 (43240-42901)
               

               
               60-220, gnl|panTro1|chr2 (51805908-51806274)
               

               
               60-220, gnl|rheMac2|chr2 (86206404-86206038)
               

               
               60-220, gnl|rn3|chr8 (112926454-112926109)
               


               
               302-417, gnl|bosTau2|chr22 (38460795-38460910)
               

               
               302-417, gnl|Hg17|chr3 (50227089-50227204)
               

               
               302-417, gnl|Mm7|chr9 (107388199-107388084)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-220, gnl|bosTau2|chr22 (38460304-38460463)
               

               
               60-220, gnl|canFam2|chr20 (42115131-42114775)
               

               
               60-220, gnl|echTel1|scaffold_268741 (3162-3483)
               

               
               60-220, gnl|hg17|chr3 (50226333-50226699)
               

               
               60-220, gnl|Hg17|chr3 (50226584-50226738)
               

               
               60-220, gnl|mm7|chr9 (107388886-107388582)
               

               
               60-220, gnl|Mm7|chr9 (107388693-107388541)
               

               
               60-220, gnl|monDom2|scaffold_5 (74249119-74248755)
               

               
               60-220, gnl|oryCun1|scaffold_210732 (43240-42901)
               

               
               60-220, gnl|panTro1|chr2 (51805908-51806274)
               

               
               60-220, gnl|rheMac2|chr2 (86206404-86206038)
               

               
               60-220, gnl|rn3|chr8 (112926454-112926109)
               


               
               302-417, gnl|bosTau2|chr22 (38460795-38460910)
               

               
               302-417, gnl|Hg17|chr3 (50227089-50227204)
               

               
               302-417, gnl|Mm7|chr9 (107388199-107388084)

	60-220, gnl\|bosTau2\|chr22 (38460304-38460463)
	60-220, gnl\|canFam2\|chr20 (42115131-42114775)
	60-220, gnl\|echTel1\|scaffold_268741 (3162-3483)
	60-220, gnl\|hg17\|chr3 (50226333-50226699)
	60-220, gnl\|Hg17\|chr3 (50226584-50226738)
	60-220, gnl\|mm7\|chr9 (107388886-107388582)
	60-220, gnl\|Mm7\|chr9 (107388693-107388541)
	60-220, gnl\|monDom2\|scaffold_5 (74249119-74248755)
	60-220, gnl\|oryCun1\|scaffold_210732 (43240-42901)
	60-220, gnl\|panTro1\|chr2 (51805908-51806274)
	60-220, gnl\|rheMac2\|chr2 (86206404-86206038)
	60-220, gnl\|rn3\|chr8 (112926454-112926109)

	302-417, gnl\|bosTau2\|chr22 (38460795-38460910)
	302-417, gnl\|Hg17\|chr3 (50227089-50227204)
	302-417, gnl\|Mm7\|chr9 (107388199-107388084)