Non-Coding RNA Search

Ss1.1-Pig1-52F10.5

Sequence:


               
               GATTTCTTGAGCCCTGCGGGTAAACGGGGTCTCAGGCTGAGCGCTTTCAGTTGTGTTGTT
TTGTTTGTACAGCAGCACAGCCCTGGGAAGTGGACATGCATATTCGCTCCATTTTACAGA
TGAGGAAACTGAGGCCCAGAGAGGTGCAATGACTTGCTCAAGGTCACACAGCTAGTCATG
GCAGAGCTGGGAGGAGTAGGCGCGGGGCAAAGAACCGAGCGGCCCGAGAGGCGGAGAGAG
GATGCGGCCCGCGGCAGCTGTCCAGAGCAGTGCACGGTGATCGCCTCCCCCGGAGGAGGA
GTTGCCTAGACCATTGCTACATTTCTTGTTTTCCTCCCCCCTCCCCCACTGTAATTACAT
TGGCTGCTGGAGGGGACTGCGAGAGACGGAGGAGGCGCCTCACTACCCCCCTCGCGCCCG
CCACCCCGGCTCTTTCCCGTCCCGGGCCAGGATGACTGGAGTCTTTGACAGTCTGGTGGC
TGATATGCACTCGACCCAGATCACGGCCTCCAGCACGTACCACCAGCACCAGCAGCCCCC
GAGCGGCGGCGGCGCTGGCCCCGGCGGCAGCAACGGCAGCAGCCTCCACAAGCCCCANGA
GTCGCCCACCCTCCCGGTGTNCACAGCTACCGACAGCAGCTATTACACCAACCAGCAACA
CCCAACGGGCGGCGGANGCGGCGGTGGGGGCTCACCCTACGCGCACATGGGTTCCTACCA
GTACCACGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTCTTGAGCCCTGCGGGTAAACGGGGTCTCAGGCTGAGCGCTTTCAGTTGTGTTGTT
TTGTTTGTACAGCAGCACAGCCCTGGGAAGTGGACATGCATATTCGCTCCATTTTACAGA
TGAGGAAACTGAGGCCCAGAGAGGTGCAATGACTTGCTCAAGGTCACACAGCTAGTCATG
GCAGAGCTGGGAGGAGTAGGCGCGGGGCAAAGAACCGAGCGGCCCGAGAGGCGGAGAGAG
GATGCGGCCCGCGGCAGCTGTCCAGAGCAGTGCACGGTGATCGCCTCCCCCGGAGGAGGA
GTTGCCTAGACCATTGCTACATTTCTTGTTTTCCTCCCCCCTCCCCCACTGTAATTACAT
TGGCTGCTGGAGGGGACTGCGAGAGACGGAGGAGGCGCCTCACTACCCCCCTCGCGCCCG
CCACCCCGGCTCTTTCCCGTCCCGGGCCAGGATGACTGGAGTCTTTGACAGTCTGGTGGC
TGATATGCACTCGACCCAGATCACGGCCTCCAGCACGTACCACCAGCACCAGCAGCCCCC
GAGCGGCGGCGGCGCTGGCCCCGGCGGCAGCAACGGCAGCAGCCTCCACAAGCCCCANGA
GTCGCCCACCCTCCCGGTGTNCACAGCTACCGACAGCAGCTATTACACCAACCAGCAACA
CCCAACGGGCGGCGGANGCGGCGGTGGGGGCTCACCCTACGCGCACATGGGTTCCTACCA
GTACCACGCCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               275-389, - strand, RNAz p=0.891496

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-389, - strand, RNAz p=0.891496

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               2-194, gnl|bosTau2|chr13 (49340376-49340185)
               

               
               2-194, gnl|canFam2|chr24 (28974241-28974652)
               

               
               2-194, gnl|echTel1|scaffold_302812 (2934-3345)
               

               
               2-194, gnl|hg17|chr20 (35449471-35449919)
               

               
               2-194, gnl|Hg17|chr20 (35449621-35449813)
               

               
               2-194, gnl|loxAfr1|scaffold_35331 (1586-1145)
               

               
               2-194, gnl|panTro1|chr21 (37771393-37771841)
               

               
               2-194, gnl|rheMac2|chr10 (27074566-27074126)
               


               
               200-732, gnl|bosTau2|chr2 (17572512-17573047)
               

               
               200-732, gnl|Hg17|chr2 (172793027-172792490)
               

               
               200-732, gnl|Mm7|chr2 (71390353-71389810)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-194, gnl|bosTau2|chr13 (49340376-49340185)
               

               
               2-194, gnl|canFam2|chr24 (28974241-28974652)
               

               
               2-194, gnl|echTel1|scaffold_302812 (2934-3345)
               

               
               2-194, gnl|hg17|chr20 (35449471-35449919)
               

               
               2-194, gnl|Hg17|chr20 (35449621-35449813)
               

               
               2-194, gnl|loxAfr1|scaffold_35331 (1586-1145)
               

               
               2-194, gnl|panTro1|chr21 (37771393-37771841)
               

               
               2-194, gnl|rheMac2|chr10 (27074566-27074126)
               


               
               200-732, gnl|bosTau2|chr2 (17572512-17573047)
               

               
               200-732, gnl|Hg17|chr2 (172793027-172792490)
               

               
               200-732, gnl|Mm7|chr2 (71390353-71389810)

	2-194, gnl\|bosTau2\|chr13 (49340376-49340185)
	2-194, gnl\|canFam2\|chr24 (28974241-28974652)
	2-194, gnl\|echTel1\|scaffold_302812 (2934-3345)
	2-194, gnl\|hg17\|chr20 (35449471-35449919)
	2-194, gnl\|Hg17\|chr20 (35449621-35449813)
	2-194, gnl\|loxAfr1\|scaffold_35331 (1586-1145)
	2-194, gnl\|panTro1\|chr21 (37771393-37771841)
	2-194, gnl\|rheMac2\|chr10 (27074566-27074126)

	200-732, gnl\|bosTau2\|chr2 (17572512-17573047)
	200-732, gnl\|Hg17\|chr2 (172793027-172792490)
	200-732, gnl\|Mm7\|chr2 (71390353-71389810)