Ss1.1-Pig1-52M24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCCCTTGCTCTATGAGACTGGCCGCATCCCCTTCACGCTCTCCATGGACAATGGCCGC TCCTTCCCACGCTCTGGCAACTGGCTGGCCGTGCATCCCAGTAAAGTATCAGAGTCGGAG AAGAGCCAGCTGGTGAATGAGACCCGCTGGCAGTACTACGGCACGGAAGGCACCCTGGGC AACCTCACCCTGACCTGGAACACCTCGGCTCTGCCCACCAACTCCATCACTGTCGAGCTC TGGGGCTACGAGGAGACGGGGAAGCCATACTCAGAGGCATGGGACAGCAGCATGGTCATA CCTGTACCCCTTGGCCACTAACATCCCCAACTCCGGCTCCTTCACCTTCACACCACAACC TGCCCCTCAAAACTACCAGAGGTGGAAAGTGGGTGCCCTTCGCATCATCAGCAGCAAACA CCACGTGGGGGAGAAGGATGTGCAAGCACTCTGGACCAATGAGCACGCACTGGCCTGGCA CCTGGGCGATGACTTCAGGGCTGACCCTGTGGCCTGGGCCCGTGCTCAGTGCCTGGCCTG GGAGGAGCTGGAGGATCAGCTGCCCAACTTCCTGGAGGAGATTCCCGATTGCCCCTGCAC CCTGGCCCAGGCCCGGGCTGACTCTGGCCGCTTCCACACGGACTATGGCTGTGACGTGGA GCATGGCAGCGTGTGCACCTATCACCCAGGGGCTGTGCACTGCGTTCGCTTCCGTGCAAG CCAGCTCCCAGTAACGGCTTCAGGCCAGCAGTGCTGCTATACGGAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCCCTTGCTCTATGAGACTGGCCGCATCCCCTTCACGCTCTCCATGGACAATGGCCGC TCCTTCCCACGCTCTGGCAACTGGCTGGCCGTGCATCCCAGTAAAGTATCAGAGTCGGAG AAGAGCCAGCTGGTGAATGAGACCCGCTGGCAGTACTACGGCACGGAAGGCACCCTGGGC AACCTCACCCTGACCTGGAACACCTCGGCTCTGCCCACCAACTCCATCACTGTCGAGCTC TGGGGCTACGAGGAGACGGGGAAGCCATACTCAGAGGCATGGGACAGCAGCATGGTCATA CCTGTACCCCTTGGCCACTAACATCCCCAACTCCGGCTCCTTCACCTTCACACCACAACC TGCCCCTCAAAACTACCAGAGGTGGAAAGTGGGTGCCCTTCGCATCATCAGCAGCAAACA CCACGTGGGGGAGAAGGATGTGCAAGCACTCTGGACCAATGAGCACGCACTGGCCTGGCA CCTGGGCGATGACTTCAGGGCTGACCCTGTGGCCTGGGCCCGTGCTCAGTGCCTGGCCTG GGAGGAGCTGGAGGATCAGCTGCCCAACTTCCTGGAGGAGATTCCCGATTGCCCCTGCAC CCTGGCCCAGGCCCGGGCTGACTCTGGCCGCTTCCACACGGACTATGGCTGTGACGTGGA GCATGGCAGCGTGTGCACCTATCACCCAGGGGCTGTGCACTGCGTTCGCTTCCGTGCAAG CCAGCTCCCAGTAACGGCTTCAGGCCAGCAGTGCTGCTATACGGAGAC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 513-637, - strand, RNAz p=0.866859 | |
| 515-634, - strand, RNAz p=0.799526 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 513-637, - strand, RNAz p=0.866859 | |
| 515-634, - strand, RNAz p=0.799526 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 91-266, gnl|bosTau2|chr17 (44697478-44697654) | |
| 91-266, gnl|canFam2|chr26 (31426253-31426514) | |
| 91-266, gnl|canFam2|chr26 (31426514-31426323) | |
| 91-266, gnl|canFam2|chr26 (31426514-31426323) | |
| 91-266, gnl|danRer3|chr20 (25517020-25516835) | |
| 91-266, gnl|dasNov1|scaffold_195369 (624-395) | |
| 91-266, gnl|dasNov1|scaffold_195369 (393-586) | |
| 91-266, gnl|dasNov1|scaffold_195369 (393-586) | |
| 91-266, gnl|fr1|chrUn (66491360-66491555) | |
| 91-266, gnl|galGal2|chr15 (7791061-7790885) | |
| 91-266, gnl|hg17|chr22 (18848331-18848572) | |
| 91-266, gnl|hg17|chr22 (22904646-22904839) | |
| 91-266, gnl|hg17|chr22 (20049980-20050169) | |
| 91-266, gnl|Hg17|chr22 (22904657-22904833) | |
| 91-266, gnl|loxAfr1|scaffold_80574 (8790-8539) | |
| 91-266, gnl|loxAfr1|scaffold_80574 (8539-8728) | |
| 91-266, gnl|loxAfr1|scaffold_80574 (8538-8728) | |
| 91-266, gnl|mm7|chr10 (75297017-75297263) | |
| 91-266, gnl|mm7|chr10 (75297265-75297072) | |
| 91-266, gnl|mm7|chr10 (75297265-75297072) | |
| 91-266, gnl|Mm7|chr10 (75297252-75297076) | |
| 91-266, gnl|monDom2|scaffold_94 (19170-18927) | |
| 91-266, gnl|monDom2|scaffold_94 (18925-19130) | |
| 91-266, gnl|monDom2|scaffold_94 (18925-19118) | |
| 91-266, gnl|panTro1|chr23 (22956380-22956573) | |
| 91-266, gnl|panTro1|chr23_random (4782216-4781975) | |
| 91-266, gnl|panTro1|chr23_random (4781973-4782162) | |
| 91-266, gnl|rn3|chr20 (13440253-13440499) | |
| 91-266, gnl|rn3|chr20 (13440501-13440310) | |
| 91-266, gnl|rn3|chr20 (13440501-13440310) | |
| 91-266, gnl|tetNig1|chr4 (1782185-1782368) | |
| 91-266, gnl|tetNig1|chr4 (1782174-1782368) | |
| 91-266, gnl|xenTro1|scaffold_2 (1142836-1143019) | |
| 436-637, gnl|bosTau2|chr17 (44698385-44698586) | |
| 436-637, gnl|canFam2|chr26 (31425534-31425355) | |
| 436-637, gnl|danRer3|chr20 (25508588-25508410) | |
| 436-637, gnl|dasNov1|scaffold_195369 (1028-1207) | |
| 436-637, gnl|fr1|chrUn (66492664-66492842) | |
| 436-637, gnl|galGal2|chr15 (7789396-7789217) | |
| 436-637, gnl|hg17|chr22 (22905614-22905793) | |
| 436-637, gnl|Hg17|chr22 (22905616-22905817) | |
| 436-637, gnl|mm7|chr10 (75296312-75296133) | |
| 436-637, gnl|Mm7|chr10 (75296308-75296107) | |
| 436-637, gnl|monDom2|scaffold_94 (19590-19769) | |
| 436-637, gnl|oryCun1|scaffold_140000 (4-176) | |
| 436-637, gnl|panTro1|chr23 (22957349-22957528) | |
| 436-637, gnl|rheMac2|chr10 (68061663-68061842) | |
| 436-637, gnl|rn3|chr20 (13439542-13439363) | |
| 436-637, gnl|tetNig1|chr4 (1782686-1782864) | |
| 436-637, gnl|xenTro1|scaffold_2 (1144505-1144687) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-266, gnl|bosTau2|chr17 (44697478-44697654) | |
| 91-266, gnl|canFam2|chr26 (31426253-31426514) | |
| 91-266, gnl|canFam2|chr26 (31426514-31426323) | |
| 91-266, gnl|canFam2|chr26 (31426514-31426323) | |
| 91-266, gnl|danRer3|chr20 (25517020-25516835) | |
| 91-266, gnl|dasNov1|scaffold_195369 (624-395) | |
| 91-266, gnl|dasNov1|scaffold_195369 (393-586) | |
| 91-266, gnl|dasNov1|scaffold_195369 (393-586) | |
| 91-266, gnl|fr1|chrUn (66491360-66491555) | |
| 91-266, gnl|galGal2|chr15 (7791061-7790885) | |
| 91-266, gnl|hg17|chr22 (18848331-18848572) | |
| 91-266, gnl|hg17|chr22 (22904646-22904839) | |
| 91-266, gnl|hg17|chr22 (20049980-20050169) | |
| 91-266, gnl|Hg17|chr22 (22904657-22904833) | |
| 91-266, gnl|loxAfr1|scaffold_80574 (8790-8539) | |
| 91-266, gnl|loxAfr1|scaffold_80574 (8539-8728) | |
| 91-266, gnl|loxAfr1|scaffold_80574 (8538-8728) | |
| 91-266, gnl|mm7|chr10 (75297017-75297263) | |
| 91-266, gnl|mm7|chr10 (75297265-75297072) | |
| 91-266, gnl|mm7|chr10 (75297265-75297072) | |
| 91-266, gnl|Mm7|chr10 (75297252-75297076) | |
| 91-266, gnl|monDom2|scaffold_94 (19170-18927) | |
| 91-266, gnl|monDom2|scaffold_94 (18925-19130) | |
| 91-266, gnl|monDom2|scaffold_94 (18925-19118) | |
| 91-266, gnl|panTro1|chr23 (22956380-22956573) | |
| 91-266, gnl|panTro1|chr23_random (4782216-4781975) | |
| 91-266, gnl|panTro1|chr23_random (4781973-4782162) | |
| 91-266, gnl|rn3|chr20 (13440253-13440499) | |
| 91-266, gnl|rn3|chr20 (13440501-13440310) | |
| 91-266, gnl|rn3|chr20 (13440501-13440310) | |
| 91-266, gnl|tetNig1|chr4 (1782185-1782368) | |
| 91-266, gnl|tetNig1|chr4 (1782174-1782368) | |
| 91-266, gnl|xenTro1|scaffold_2 (1142836-1143019) | |
| 436-637, gnl|bosTau2|chr17 (44698385-44698586) | |
| 436-637, gnl|canFam2|chr26 (31425534-31425355) | |
| 436-637, gnl|danRer3|chr20 (25508588-25508410) | |
| 436-637, gnl|dasNov1|scaffold_195369 (1028-1207) | |
| 436-637, gnl|fr1|chrUn (66492664-66492842) | |
| 436-637, gnl|galGal2|chr15 (7789396-7789217) | |
| 436-637, gnl|hg17|chr22 (22905614-22905793) | |
| 436-637, gnl|Hg17|chr22 (22905616-22905817) | |
| 436-637, gnl|mm7|chr10 (75296312-75296133) | |
| 436-637, gnl|Mm7|chr10 (75296308-75296107) | |
| 436-637, gnl|monDom2|scaffold_94 (19590-19769) | |
| 436-637, gnl|oryCun1|scaffold_140000 (4-176) | |
| 436-637, gnl|panTro1|chr23 (22957349-22957528) | |
| 436-637, gnl|rheMac2|chr10 (68061663-68061842) | |
| 436-637, gnl|rn3|chr20 (13439542-13439363) | |
| 436-637, gnl|tetNig1|chr4 (1782686-1782864) | |
| 436-637, gnl|xenTro1|scaffold_2 (1144505-1144687) |