Ss1.1-Pig1-54C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACGCGTCCGCTGCACCCACCGCCGTGAACTCCTCGGCCCCACCAGACAAGCCGTTATC CAACATGAAGATCCTGACTCTTGGGAAACTCTCCCGGAACAAGGATGAAGTGAAGGCCGC GATCGAGAAACTCGGGGGGAAGTTGACAGGGACGGCCAGCAAGGCCTCCCTGTGCGTCAG CACCAAGAAGGAGGTGGACAAGATGAGTAACAAGATGGAGGAAGTGAAAGAAGCGAATGT CCGAGTGGTGTCCGAGGATTTCCTCCAGGACGTCTCGGCCTCGACCAAGAGCCTTCAGGA GCTGCTCTGCACCCACATCCTGTCCCCCTGGGGGGCCGAAATGAAGGCTGAGGTGAAGGC CGAACCTGTGGAAGCCGTGGCCCCCAGAGGGAAGTCAGGGGGTGCACTCCCCAAGAAGAG CAAGGGTCCCATCAGGGAGGAAGGTGCCAACAAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACGCGTCCGCTGCACCCACCGCCGTGAACTCCTCGGCCCCACCAGACAAGCCGTTATC CAACATGAAGATCCTGACTCTTGGGAAACTCTCCCGGAACAAGGATGAAGTGAAGGCCGC GATCGAGAAACTCGGGGGGAAGTTGACAGGGACGGCCAGCAAGGCCTCCCTGTGCGTCAG CACCAAGAAGGAGGTGGACAAGATGAGTAACAAGATGGAGGAAGTGAAAGAAGCGAATGT CCGAGTGGTGTCCGAGGATTTCCTCCAGGACGTCTCGGCCTCGACCAAGAGCCTTCAGGA GCTGCTCTGCACCCACATCCTGTCCCCCTGGGGGGCCGAAATGAAGGCTGAGGTGAAGGC CGAACCTGTGGAAGCCGTGGCCCCCAGAGGGAAGTCAGGGGGTGCACTCCCCAAGAAGAG CAAGGGTCCCATCAGGGAGGAAGGTGCCAACAAATC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 76-195, - strand, RNAz p=0.900708 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 76-195, - strand, RNAz p=0.900708 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 44-195, gnl|bosTau2|chr16 (17710457-17710307) | |
| 44-195, gnl|canFam2|chr27 (27686751-27686891) | |
| 44-195, gnl|canFam2|chr7 (41496040-41495900) | |
| 44-195, gnl|danRer3|chr20 (51810489-51810349) | |
| 44-195, gnl|danRer3|chr20 (51810336-51810476) | |
| 44-195, gnl|dasNov1|scaffold_26464 (7766-7631) | |
| 44-195, gnl|dasNov1|scaffold_26464 (7617-7756) | |
| 44-195, gnl|echTel1|scaffold_280399 (70161-69986) | |
| 44-195, gnl|fr1|chrUn (53192090-53191954) | |
| 44-195, gnl|fr1|chrUn (53191941-53192081) | |
| 44-195, gnl|galGal2|chr3 (13381422-13381288) | |
| 44-195, gnl|galGal2|chr3 (13381274-13381415) | |
| 44-195, gnl|hg17|chr1 (222875494-222875634) | |
| 44-195, gnl|Hg17|chr1 (222875648-222875498) | |
| 44-195, gnl|hg17|chr13 (110388257-110388398) | |
| 44-195, gnl|mm7|chr1 (180567488-180567348) | |
| 44-195, gnl|mm7|chr1 (180567334-180567475) | |
| 44-195, gnl|Mm7|chr1 (180567332-180567482) | |
| 44-195, gnl|monDom2|scaffold_13 (34505799-34505939) | |
| 44-195, gnl|monDom2|scaffold_13 (34505952-34505812) | |
| 44-195, gnl|oryCun1|scaffold_190690 (39599-39739) | |
| 44-195, gnl|oryCun1|scaffold_190690 (39753-39612) | |
| 44-195, gnl|panTro1|chr1 (206694058-206694198) | |
| 44-195, gnl|panTro1|chr1 (206694212-206694071) | |
| 44-195, gnl|rheMac2|chr1 (143989709-143989569) | |
| 44-195, gnl|rheMac2|chr1 (143989555-143989696) | |
| 44-195, gnl|rn3|chr13 (96516777-96516641) | |
| 44-195, gnl|rn3|chr13 (96516627-96516768) | |
| 44-195, gnl|tetNig1|chr14 (4919101-4919236) | |
| 44-195, gnl|tetNig1|chr14 (4919249-4919109) | |
| 44-195, gnl|xenTro1|scaffold_215 (1309079-1308939) | |
| 44-195, gnl|xenTro1|scaffold_215 (1308933-1309066) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-195, gnl|bosTau2|chr16 (17710457-17710307) | |
| 44-195, gnl|canFam2|chr27 (27686751-27686891) | |
| 44-195, gnl|canFam2|chr7 (41496040-41495900) | |
| 44-195, gnl|danRer3|chr20 (51810489-51810349) | |
| 44-195, gnl|danRer3|chr20 (51810336-51810476) | |
| 44-195, gnl|dasNov1|scaffold_26464 (7766-7631) | |
| 44-195, gnl|dasNov1|scaffold_26464 (7617-7756) | |
| 44-195, gnl|echTel1|scaffold_280399 (70161-69986) | |
| 44-195, gnl|fr1|chrUn (53192090-53191954) | |
| 44-195, gnl|fr1|chrUn (53191941-53192081) | |
| 44-195, gnl|galGal2|chr3 (13381422-13381288) | |
| 44-195, gnl|galGal2|chr3 (13381274-13381415) | |
| 44-195, gnl|hg17|chr1 (222875494-222875634) | |
| 44-195, gnl|Hg17|chr1 (222875648-222875498) | |
| 44-195, gnl|hg17|chr13 (110388257-110388398) | |
| 44-195, gnl|mm7|chr1 (180567488-180567348) | |
| 44-195, gnl|mm7|chr1 (180567334-180567475) | |
| 44-195, gnl|Mm7|chr1 (180567332-180567482) | |
| 44-195, gnl|monDom2|scaffold_13 (34505799-34505939) | |
| 44-195, gnl|monDom2|scaffold_13 (34505952-34505812) | |
| 44-195, gnl|oryCun1|scaffold_190690 (39599-39739) | |
| 44-195, gnl|oryCun1|scaffold_190690 (39753-39612) | |
| 44-195, gnl|panTro1|chr1 (206694058-206694198) | |
| 44-195, gnl|panTro1|chr1 (206694212-206694071) | |
| 44-195, gnl|rheMac2|chr1 (143989709-143989569) | |
| 44-195, gnl|rheMac2|chr1 (143989555-143989696) | |
| 44-195, gnl|rn3|chr13 (96516777-96516641) | |
| 44-195, gnl|rn3|chr13 (96516627-96516768) | |
| 44-195, gnl|tetNig1|chr14 (4919101-4919236) | |
| 44-195, gnl|tetNig1|chr14 (4919249-4919109) | |
| 44-195, gnl|xenTro1|scaffold_215 (1309079-1308939) | |
| 44-195, gnl|xenTro1|scaffold_215 (1308933-1309066) |