Non-Coding RNA Search

Ss1.1-Pig1-54I24.5

Sequence:


               
               GGTGGGCTGGGTAAGATCAGGTTTATAACAACCCTGCTTCTAATGAGGGCAGGGAGCGAT
CCCCAGAAAAGAAGTAGGCTCCCAAGATTATAGCCGTCGCTGAGTTACATACCCCCCCAG
GGCCCAGGTGGAGGCTGCCCGCTTCATCATGGGGCCTGTGGCGGCCGTCGCTGCCCCACC
ATCTTCCAGACTGCATAGCAAGAGCCGCCCAGCCCGAGGACAGCCAGCAGTGCAGCCACA
ATCCCAGCCAGTGGACTCCGGGGCTCTGCCTTCAGCTCCCCGGCTATCTGCATCTGGAAA
TGCACAGAGGGTCCGCCTGAGGGGTCACTTGAGACCTCTGGGAAGGTGGGGGGTGGAAAG
GGGCTGAGTTAGGGGAAGGAGATATGGATGCCACTGCTGCCCCAGGGAGATTCCACCCCA
ATCCCTCTCGCTTCATTGCCCATCTAGGCCCCGGCTGCTCAGGCGGCAGGGAACGTGACA
GCCTGGCTGCCGGGTGTCAACCCAGCCATGGTAGGGGGAGTAAGGGGTCGTTGGCAGAAG
CCATTGGTTAAGGGTACGTACCTGTAGCACTCGAAAGTAGCCAGGGGTCACGCGTGGAAA
TCGCATGGTGGGTGCTGCTAGTGTCACTGGTGTCCTGTGGGGCGGAAGCGGGAATGAAGA
CCAGTGGCGTTTGTGGTACCAAGAAACGGAAATCAGGGCGCAGGGTTTCCTGACCTCTCA
TACGCAAGAGAGCCATGCCCTCAGAGGATGCTCACCAGTGCCTGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGCTGGGTAAGATCAGGTTTATAACAACCCTGCTTCTAATGAGGGCAGGGAGCGAT
CCCCAGAAAAGAAGTAGGCTCCCAAGATTATAGCCGTCGCTGAGTTACATACCCCCCCAG
GGCCCAGGTGGAGGCTGCCCGCTTCATCATGGGGCCTGTGGCGGCCGTCGCTGCCCCACC
ATCTTCCAGACTGCATAGCAAGAGCCGCCCAGCCCGAGGACAGCCAGCAGTGCAGCCACA
ATCCCAGCCAGTGGACTCCGGGGCTCTGCCTTCAGCTCCCCGGCTATCTGCATCTGGAAA
TGCACAGAGGGTCCGCCTGAGGGGTCACTTGAGACCTCTGGGAAGGTGGGGGGTGGAAAG
GGGCTGAGTTAGGGGAAGGAGATATGGATGCCACTGCTGCCCCAGGGAGATTCCACCCCA
ATCCCTCTCGCTTCATTGCCCATCTAGGCCCCGGCTGCTCAGGCGGCAGGGAACGTGACA
GCCTGGCTGCCGGGTGTCAACCCAGCCATGGTAGGGGGAGTAAGGGGTCGTTGGCAGAAG
CCATTGGTTAAGGGTACGTACCTGTAGCACTCGAAAGTAGCCAGGGGTCACGCGTGGAAA
TCGCATGGTGGGTGCTGCTAGTGTCACTGGTGTCCTGTGGGGCGGAAGCGGGAATGAAGA
CCAGTGGCGTTTGTGGTACCAAGAAACGGAAATCAGGGCGCAGGGTTTCCTGACCTCTCA
TACGCAAGAGAGCCATGCCCTCAGAGGATGCTCACCAGTGCCTGCCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               269-377, - strand, RNAz p=0.565446
               

               
               418-532, + strand, RNAz p=0.853594

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-377, - strand, RNAz p=0.565446
               

               
               418-532, + strand, RNAz p=0.853594

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr2 (79666496-79665724)
               

               
               1-768, gnl|Hg17|chr1 (26181685-26182456)
               

               
               1-768, gnl|Mm7|chr4 (133622948-133622205)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr2 (79666496-79665724)
               

               
               1-768, gnl|Hg17|chr1 (26181685-26182456)
               

               
               1-768, gnl|Mm7|chr4 (133622948-133622205)

	269-377, - strand, RNAz p=0.565446
	418-532, + strand, RNAz p=0.853594

	1-768, gnl\|bosTau2\|chr2 (79666496-79665724)
	1-768, gnl\|Hg17\|chr1 (26181685-26182456)
	1-768, gnl\|Mm7\|chr4 (133622948-133622205)