Non-Coding RNA Search

Ss1.1-Pig1-54K17.5

Sequence:


               
               AGGGATTTCAGATTCTGCAGTCCACCCTCCCACTGGACACCAGTTTTCTCTGCTCTCACA
TGTCAGAATTCCCCTGAACTATGTCATCTTTATTTCCACAGCCTCAAAGCCTTGGACTCC
AGGCAACTAACTCAGCTACACCAAGATGCTGCCTGGGGGAGAGGGAGGCTAGAGGACACC
AAGGCAGTCACTCCAGGGGCAAACTGGAGCAGGGCAGTTACTCAGCTCTGGGCAGAACTG
AATTCCTTAGAGACAGCAGGGAGCAGAGGTGAAGCAACCAAGAGGTATCATGTAAACCCT
GAGGGTCAGGAAGAAACGCAGGCTTACCAGGTGGCAAGCCTTCCAGACTGAGGCTGCAGC
CTTTCCTCTGCTCGCAGCACCATCTGGGCCCACAGCCAAGGTGGCAGAAGCTGCCAGACA
GGCATGAATGGAAAAACGCAGGAAGCAAAGAGACGGGGCAATGAGATTTCCCCCTTGCAC
ACACAGCTAAAGGGAACTGAGTAAGAAGAACTGTCTTTCCCCAGAGCAGGGGTTCCCATG
AAGGTGTCATGAAGAGGGGACTGGGACATCCCATTTTCATCTCTGTGAAGCCAGGGTGTG
AGTAGGGTCGCACGCATAACAGGCATTTAAGTAGACATTTTCCCCAAAGAGCAAAAGCCC
ACAAAGAACAGAGAGCTTGGGAAGAGGTTTATCAGGAGGAATTTTTCTTCTGCCCGAAAT
ACTTTTTCTTGGAAGGTGGCCAGATTAGGTATTTGGGAGCAAGAAAGACTCAGTGGTGGC
AACAGAGTCAGTGGTGGCAAAACCTTTTTAGGAAAGGGAAGCAGCTGTATTGGACCCAAA
GAGTCCAGAGAACCGGATTCCGGCACCCGCCATTGCACCCCCACCTTCAAGAGTGACCTC
ACGTGGGTCACATTCCCTGCCTGAGTCCCCTTGGCCCCTGGCACATACGGGAGGGTTGGA
CACTCTGTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGATTTCAGATTCTGCAGTCCACCCTCCCACTGGACACCAGTTTTCTCTGCTCTCACA
TGTCAGAATTCCCCTGAACTATGTCATCTTTATTTCCACAGCCTCAAAGCCTTGGACTCC
AGGCAACTAACTCAGCTACACCAAGATGCTGCCTGGGGGAGAGGGAGGCTAGAGGACACC
AAGGCAGTCACTCCAGGGGCAAACTGGAGCAGGGCAGTTACTCAGCTCTGGGCAGAACTG
AATTCCTTAGAGACAGCAGGGAGCAGAGGTGAAGCAACCAAGAGGTATCATGTAAACCCT
GAGGGTCAGGAAGAAACGCAGGCTTACCAGGTGGCAAGCCTTCCAGACTGAGGCTGCAGC
CTTTCCTCTGCTCGCAGCACCATCTGGGCCCACAGCCAAGGTGGCAGAAGCTGCCAGACA
GGCATGAATGGAAAAACGCAGGAAGCAAAGAGACGGGGCAATGAGATTTCCCCCTTGCAC
ACACAGCTAAAGGGAACTGAGTAAGAAGAACTGTCTTTCCCCAGAGCAGGGGTTCCCATG
AAGGTGTCATGAAGAGGGGACTGGGACATCCCATTTTCATCTCTGTGAAGCCAGGGTGTG
AGTAGGGTCGCACGCATAACAGGCATTTAAGTAGACATTTTCCCCAAAGAGCAAAAGCCC
ACAAAGAACAGAGAGCTTGGGAAGAGGTTTATCAGGAGGAATTTTTCTTCTGCCCGAAAT
ACTTTTTCTTGGAAGGTGGCCAGATTAGGTATTTGGGAGCAAGAAAGACTCAGTGGTGGC
AACAGAGTCAGTGGTGGCAAAACCTTTTTAGGAAAGGGAAGCAGCTGTATTGGACCCAAA
GAGTCCAGAGAACCGGATTCCGGCACCCGCCATTGCACCCCCACCTTCAAGAGTGACCTC
ACGTGGGTCACATTCCCTGCCTGAGTCCCCTTGGCCCCTGGCACATACGGGAGGGTTGGA
CACTCTGTTCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               280-437, + strand, RNAz p=0.990437
               

               
               457-685, - strand, RNAz p=0.622747

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-437, + strand, RNAz p=0.990437
               

               
               457-685, - strand, RNAz p=0.622747

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               3-773, gnl|bosTau2|chr10 (31252311-31253052)
               

               
               3-773, gnl|canFam2|chr30 (30921954-30922415)
               

               
               3-773, gnl|dasNov1|scaffold_5301 (3580-4056)
               

               
               3-773, gnl|echTel1|scaffold_293541 (45414-44918)
               

               
               3-773, gnl|hg17|chr15 (61427416-61427930)
               

               
               3-773, gnl|Hg17|chr15 (61427465-61428235)
               

               
               3-773, gnl|loxAfr1|scaffold_8713 (2861-3359)
               

               
               3-773, gnl|monDom2|scaffold_12 (50373172-50372759)
               

               
               3-773, gnl|oryCun1|scaffold_189006 (68804-69294)
               

               
               3-773, gnl|panTro1|chr16 (61884441-61884955)
               

               
               3-773, gnl|rheMac2|chr7 (41719489-41719999)
               


               
               779-972, gnl|bosTau2|chr10 (31253227-31253435)
               

               
               779-972, gnl|canFam2|chr30 (30922987-30923460)
               

               
               779-972, gnl|echTel1|scaffold_293541 (44488-43872)
               

               
               779-972, gnl|hg17|chr15 (61428279-61428816)
               

               
               779-972, gnl|loxAfr1|scaffold_8713 (4054-4609)
               

               
               779-972, gnl|mm7|chr9 (66776495-66776056)
               

               
               779-972, gnl|Mm7|chr9 (66776526-66776348)
               

               
               779-972, gnl|panTro1|chr16 (61885303-61885834)
               

               
               779-972, gnl|rheMac2|chr7 (41720347-41720857)
               

               
               779-972, gnl|rn3|chr8 (71070134-71069657)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-773, gnl|bosTau2|chr10 (31252311-31253052)
               

               
               3-773, gnl|canFam2|chr30 (30921954-30922415)
               

               
               3-773, gnl|dasNov1|scaffold_5301 (3580-4056)
               

               
               3-773, gnl|echTel1|scaffold_293541 (45414-44918)
               

               
               3-773, gnl|hg17|chr15 (61427416-61427930)
               

               
               3-773, gnl|Hg17|chr15 (61427465-61428235)
               

               
               3-773, gnl|loxAfr1|scaffold_8713 (2861-3359)
               

               
               3-773, gnl|monDom2|scaffold_12 (50373172-50372759)
               

               
               3-773, gnl|oryCun1|scaffold_189006 (68804-69294)
               

               
               3-773, gnl|panTro1|chr16 (61884441-61884955)
               

               
               3-773, gnl|rheMac2|chr7 (41719489-41719999)
               


               
               779-972, gnl|bosTau2|chr10 (31253227-31253435)
               

               
               779-972, gnl|canFam2|chr30 (30922987-30923460)
               

               
               779-972, gnl|echTel1|scaffold_293541 (44488-43872)
               

               
               779-972, gnl|hg17|chr15 (61428279-61428816)
               

               
               779-972, gnl|loxAfr1|scaffold_8713 (4054-4609)
               

               
               779-972, gnl|mm7|chr9 (66776495-66776056)
               

               
               779-972, gnl|Mm7|chr9 (66776526-66776348)
               

               
               779-972, gnl|panTro1|chr16 (61885303-61885834)
               

               
               779-972, gnl|rheMac2|chr7 (41720347-41720857)
               

               
               779-972, gnl|rn3|chr8 (71070134-71069657)

	280-437, + strand, RNAz p=0.990437
	457-685, - strand, RNAz p=0.622747

	3-773, gnl\|bosTau2\|chr10 (31252311-31253052)
	3-773, gnl\|canFam2\|chr30 (30921954-30922415)
	3-773, gnl\|dasNov1\|scaffold_5301 (3580-4056)
	3-773, gnl\|echTel1\|scaffold_293541 (45414-44918)
	3-773, gnl\|hg17\|chr15 (61427416-61427930)
	3-773, gnl\|Hg17\|chr15 (61427465-61428235)
	3-773, gnl\|loxAfr1\|scaffold_8713 (2861-3359)
	3-773, gnl\|monDom2\|scaffold_12 (50373172-50372759)
	3-773, gnl\|oryCun1\|scaffold_189006 (68804-69294)
	3-773, gnl\|panTro1\|chr16 (61884441-61884955)
	3-773, gnl\|rheMac2\|chr7 (41719489-41719999)

	779-972, gnl\|bosTau2\|chr10 (31253227-31253435)
	779-972, gnl\|canFam2\|chr30 (30922987-30923460)
	779-972, gnl\|echTel1\|scaffold_293541 (44488-43872)
	779-972, gnl\|hg17\|chr15 (61428279-61428816)
	779-972, gnl\|loxAfr1\|scaffold_8713 (4054-4609)
	779-972, gnl\|mm7\|chr9 (66776495-66776056)
	779-972, gnl\|Mm7\|chr9 (66776526-66776348)
	779-972, gnl\|panTro1\|chr16 (61885303-61885834)
	779-972, gnl\|rheMac2\|chr7 (41720347-41720857)
	779-972, gnl\|rn3\|chr8 (71070134-71069657)