Non-Coding RNA Search

Ss1.1-Pig1-56C02.5

Sequence:


               
               GCAGAACCAAACCCAGGATTTGGTCTGTTTACCTGTTTGGGGTTTTAGGATTGGTGAGGG
CACCACAGCTTTGCCTGTTATGCACAGCCCCCTTCCCTCCTGCACTGTGGATGGAAGCCA
GGAACTTCCTCAGACCCCCACTGGTAGCCTAGCTATGCTGGGCACTGGGCTGGATGGTGT
GCTGTTTGAAATAACAGCATACTCAGGAGGTTTCAGTGGGACTAGTTTCTTGGCTGCTCT
GTATTTGGGGGATAGAGGTTGGGGAGAGGTAGAAACCTGCTGCCTCTTAAACCACCCTGT
ATAAAATTTGCAATACAGCTTTTCCATGTACCTGTGCCTGAAATGTCTGCAATAAAGAAG
TGTTTGTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAACCAAACCCAGGATTTGGTCTGTTTACCTGTTTGGGGTTTTAGGATTGGTGAGGG
CACCACAGCTTTGCCTGTTATGCACAGCCCCCTTCCCTCCTGCACTGTGGATGGAAGCCA
GGAACTTCCTCAGACCCCCACTGGTAGCCTAGCTATGCTGGGCACTGGGCTGGATGGTGT
GCTGTTTGAAATAACAGCATACTCAGGAGGTTTCAGTGGGACTAGTTTCTTGGCTGCTCT
GTATTTGGGGGATAGAGGTTGGGGAGAGGTAGAAACCTGCTGCCTCTTAAACCACCCTGT
ATAAAATTTGCAATACAGCTTTTCCATGTACCTGTGCCTGAAATGTCTGCAATAAAGAAG
TGTTTGTAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-253, - strand, RNAz p=0.999618

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-253, - strand, RNAz p=0.999618

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               2-253, gnl|bosTau2|chr18 (14987778-14987527)
               

               
               2-253, gnl|canFam2|chr5 (84621912-84621666)
               

               
               2-253, gnl|echTel1|scaffold_310190 (46801-46567)
               

               
               2-253, gnl|hg17|chr16 (66463545-66463791)
               

               
               2-253, gnl|loxAfr1|scaffold_24176 (7859-8102)
               

               
               2-253, gnl|mm7|chr8 (104478887-104479085)
               

               
               2-253, gnl|panTro1|chr18 (60760399-60760645)
               

               
               2-253, gnl|rheMac2|chr20 (66204953-66205201)
               

               
               2-253, gnl|rn3|chr19 (35723350-35723551)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-253, gnl|bosTau2|chr18 (14987778-14987527)
               

               
               2-253, gnl|canFam2|chr5 (84621912-84621666)
               

               
               2-253, gnl|echTel1|scaffold_310190 (46801-46567)
               

               
               2-253, gnl|hg17|chr16 (66463545-66463791)
               

               
               2-253, gnl|loxAfr1|scaffold_24176 (7859-8102)
               

               
               2-253, gnl|mm7|chr8 (104478887-104479085)
               

               
               2-253, gnl|panTro1|chr18 (60760399-60760645)
               

               
               2-253, gnl|rheMac2|chr20 (66204953-66205201)
               

               
               2-253, gnl|rn3|chr19 (35723350-35723551)

	2-253, gnl\|bosTau2\|chr18 (14987778-14987527)
	2-253, gnl\|canFam2\|chr5 (84621912-84621666)
	2-253, gnl\|echTel1\|scaffold_310190 (46801-46567)
	2-253, gnl\|hg17\|chr16 (66463545-66463791)
	2-253, gnl\|loxAfr1\|scaffold_24176 (7859-8102)
	2-253, gnl\|mm7\|chr8 (104478887-104479085)
	2-253, gnl\|panTro1\|chr18 (60760399-60760645)
	2-253, gnl\|rheMac2\|chr20 (66204953-66205201)
	2-253, gnl\|rn3\|chr19 (35723350-35723551)