Ss1.1-Pig1-56E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCTCCACCGCCCCACCCCCCCTCCAGATTCTGCGCCGAGCGCCTGCGCTCCCTGCTGC ACACCTTGGAGATCGCGGACCTTGCTGACTTCTCCCCTCTCACGCTCCTCGCCAACTTTG CCACCCTAGTCAGCACCTATGCCAAGGGTTTCACCATCATCATCGAGCCCTTTGACGACA GGACCCCAACCATCGCCAACCCCGTCCTGCACTTCAGCTGCATGGACGCCTCGCTGGCCA TCAAACCCGTGTTTGAGCGCTTCCAGTCTGTCATCATCACATCTGGGACGCTGTCCCCAC TAGACATCTACCCCAAGATCCTGGACTTCCACCCCGTCACCATGGCAACTTTTACCATGA CGTTGGCCCGGGTCTGCCTCTGCCCCATGATCATCGGCCGTGGCAACGACCAGGTGGCCA TCAGCTCCAAATTTGAGACCCGGGAAGATATTGCGGTGATCCGGAACTACGGAAACCTCC TGCTGGAGATGTCCGCTGTGGTCCCCGATGGCATCGTGGCCTTCTTCACCAGCTACCAGT ACATGGAGAGCACTGTGGCCGCCTGGTACGAGCAGGGCATCCTTGAAAACATCCAGAGGA ACAAGCTGCTCTTTATCGAGACTCAAGATGGGGCTGAGACCAGTGTCGCCCTGGAGAAGT ACCAGGAGGCCTGCGAGAACGGCCGTGGGGCCATCCTGCTCTCGGTGGCCCGAGGCAAAG TGTCCGAGGGAATCGATTTTGTGCACCACTACGGGCGGGCCGTCATCATGTTCGGCGTGC CGTACGTGTACACCCAGAGCCGCATTCTCAAGGCGCGGCTGGAATACCTGCGGGACCAGT TCCAGATTCGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCTCCACCGCCCCACCCCCCCTCCAGATTCTGCGCCGAGCGCCTGCGCTCCCTGCTGC ACACCTTGGAGATCGCGGACCTTGCTGACTTCTCCCCTCTCACGCTCCTCGCCAACTTTG CCACCCTAGTCAGCACCTATGCCAAGGGTTTCACCATCATCATCGAGCCCTTTGACGACA GGACCCCAACCATCGCCAACCCCGTCCTGCACTTCAGCTGCATGGACGCCTCGCTGGCCA TCAAACCCGTGTTTGAGCGCTTCCAGTCTGTCATCATCACATCTGGGACGCTGTCCCCAC TAGACATCTACCCCAAGATCCTGGACTTCCACCCCGTCACCATGGCAACTTTTACCATGA CGTTGGCCCGGGTCTGCCTCTGCCCCATGATCATCGGCCGTGGCAACGACCAGGTGGCCA TCAGCTCCAAATTTGAGACCCGGGAAGATATTGCGGTGATCCGGAACTACGGAAACCTCC TGCTGGAGATGTCCGCTGTGGTCCCCGATGGCATCGTGGCCTTCTTCACCAGCTACCAGT ACATGGAGAGCACTGTGGCCGCCTGGTACGAGCAGGGCATCCTTGAAAACATCCAGAGGA ACAAGCTGCTCTTTATCGAGACTCAAGATGGGGCTGAGACCAGTGTCGCCCTGGAGAAGT ACCAGGAGGCCTGCGAGAACGGCCGTGGGGCCATCCTGCTCTCGGTGGCCCGAGGCAAAG TGTCCGAGGGAATCGATTTTGTGCACCACTACGGGCGGGCCGTCATCATGTTCGGCGTGC CGTACGTGTACACCCAGAGCCGCATTCTCAAGGCGCGGCTGGAATACCTGCGGGACCAGT TCCAGATTCGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 287-389, + strand, RNAz p=0.763707 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 287-389, + strand, RNAz p=0.763707 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 9-149, gnl|bosTau2|chr18 (38509586-38509725) | |
| 9-149, gnl|canFam2|chr1 (113074112-113073970) | |
| 9-149, gnl|dasNov1|scaffold_48969 (10370-10214) | |
| 9-149, gnl|echTel1|scaffold_304731 (2408-2260) | |
| 9-149, gnl|fr1|chrUn (89435852-89435724) | |
| 9-149, gnl|hg17|chr19 (50556620-50556776) | |
| 9-149, gnl|Hg17|chr19 (50556760-50556620) | |
| 9-149, gnl|mm7|chr7 (17070636-17070490) | |
| 9-149, gnl|Mm7|chr7 (17070497-17070634) | |
| 9-149, gnl|monDom2|scaffold_205 (907916-907766) | |
| 9-149, gnl|panTro1|chr20 (47740226-47740382) | |
| 9-149, gnl|rheMac2|chr19 (51794735-51794891) | |
| 9-149, gnl|rn3|chr1 (78984122-78983976) | |
| 9-149, gnl|tetNig1|chr16 (6608102-6608256) | |
| 9-149, gnl|xenTro1|scaffold_105 (786159-786295) | |
| 287-389, gnl|bosTau2|chr18 (38512352-38512454) | |
| 287-389, gnl|canFam2|chr1 (113077136-113077013) | |
| 287-389, gnl|danRer3|chr16 (16400536-16400658) | |
| 287-389, gnl|dasNov1|scaffold_92858 (729-606) | |
| 287-389, gnl|echTel1|scaffold_304731 (6391-6260) | |
| 287-389, gnl|fr1|chrUn (89436436-89436326) | |
| 287-389, gnl|hg17|chr19 (50552363-50552485) | |
| 287-389, gnl|Hg17|chr19 (50552470-50552368) | |
| 287-389, gnl|loxAfr1|scaffold_50238 (10530-10406) | |
| 287-389, gnl|mm7|chr7 (17072881-17072758) | |
| 287-389, gnl|Mm7|chr7 (17072772-17072874) | |
| 287-389, gnl|monDom2|scaffold_205 (910194-910085) | |
| 287-389, gnl|panTro1|chr20 (47735926-47736048) | |
| 287-389, gnl|rheMac2|chr19 (51790407-51790530) | |
| 287-389, gnl|rn3|chr1 (78986145-78986022) | |
| 287-389, gnl|tetNig1|chr16 (6607591-6607712) | |
| 450-576, gnl|bosTau2|chr18 (38514002-38514128) | |
| 450-576, gnl|canFam2|chr1 (113078963-113078826) | |
| 450-576, gnl|danRer3|chr16 (16398755-16398888) | |
| 450-576, gnl|dasNov1|scaffold_92858 (2157-2022) | |
| 450-576, gnl|echTel1|scaffold_304731 (8348-8207) | |
| 450-576, gnl|fr1|chrUn (89437036-89436906) | |
| 450-576, gnl|hg17|chr19 (50549824-50549957) | |
| 450-576, gnl|Hg17|chr19 (50549953-50549827) | |
| 450-576, gnl|loxAfr1|scaffold_50238 (13266-13125) | |
| 450-576, gnl|mm7|chr7 (17074466-17074333) | |
| 450-576, gnl|Mm7|chr7 (17074335-17074461) | |
| 450-576, gnl|monDom2|scaffold_205 (910809-910676) | |
| 450-576, gnl|oryCun1|scaffold_123083 (764-627) | |
| 450-576, gnl|panTro1|chr20 (47733382-47733515) | |
| 450-576, gnl|rheMac2|chr19 (51787909-51788042) | |
| 450-576, gnl|rn3|chr1 (78987749-78987615) | |
| 450-576, gnl|tetNig1|chr16 (6607215-6607345) | |
| 450-576, gnl|xenTro1|scaffold_105 (785062-785188) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-149, gnl|bosTau2|chr18 (38509586-38509725) | |
| 9-149, gnl|canFam2|chr1 (113074112-113073970) | |
| 9-149, gnl|dasNov1|scaffold_48969 (10370-10214) | |
| 9-149, gnl|echTel1|scaffold_304731 (2408-2260) | |
| 9-149, gnl|fr1|chrUn (89435852-89435724) | |
| 9-149, gnl|hg17|chr19 (50556620-50556776) | |
| 9-149, gnl|Hg17|chr19 (50556760-50556620) | |
| 9-149, gnl|mm7|chr7 (17070636-17070490) | |
| 9-149, gnl|Mm7|chr7 (17070497-17070634) | |
| 9-149, gnl|monDom2|scaffold_205 (907916-907766) | |
| 9-149, gnl|panTro1|chr20 (47740226-47740382) | |
| 9-149, gnl|rheMac2|chr19 (51794735-51794891) | |
| 9-149, gnl|rn3|chr1 (78984122-78983976) | |
| 9-149, gnl|tetNig1|chr16 (6608102-6608256) | |
| 9-149, gnl|xenTro1|scaffold_105 (786159-786295) | |
| 287-389, gnl|bosTau2|chr18 (38512352-38512454) | |
| 287-389, gnl|canFam2|chr1 (113077136-113077013) | |
| 287-389, gnl|danRer3|chr16 (16400536-16400658) | |
| 287-389, gnl|dasNov1|scaffold_92858 (729-606) | |
| 287-389, gnl|echTel1|scaffold_304731 (6391-6260) | |
| 287-389, gnl|fr1|chrUn (89436436-89436326) | |
| 287-389, gnl|hg17|chr19 (50552363-50552485) | |
| 287-389, gnl|Hg17|chr19 (50552470-50552368) | |
| 287-389, gnl|loxAfr1|scaffold_50238 (10530-10406) | |
| 287-389, gnl|mm7|chr7 (17072881-17072758) | |
| 287-389, gnl|Mm7|chr7 (17072772-17072874) | |
| 287-389, gnl|monDom2|scaffold_205 (910194-910085) | |
| 287-389, gnl|panTro1|chr20 (47735926-47736048) | |
| 287-389, gnl|rheMac2|chr19 (51790407-51790530) | |
| 287-389, gnl|rn3|chr1 (78986145-78986022) | |
| 287-389, gnl|tetNig1|chr16 (6607591-6607712) | |
| 450-576, gnl|bosTau2|chr18 (38514002-38514128) | |
| 450-576, gnl|canFam2|chr1 (113078963-113078826) | |
| 450-576, gnl|danRer3|chr16 (16398755-16398888) | |
| 450-576, gnl|dasNov1|scaffold_92858 (2157-2022) | |
| 450-576, gnl|echTel1|scaffold_304731 (8348-8207) | |
| 450-576, gnl|fr1|chrUn (89437036-89436906) | |
| 450-576, gnl|hg17|chr19 (50549824-50549957) | |
| 450-576, gnl|Hg17|chr19 (50549953-50549827) | |
| 450-576, gnl|loxAfr1|scaffold_50238 (13266-13125) | |
| 450-576, gnl|mm7|chr7 (17074466-17074333) | |
| 450-576, gnl|Mm7|chr7 (17074335-17074461) | |
| 450-576, gnl|monDom2|scaffold_205 (910809-910676) | |
| 450-576, gnl|oryCun1|scaffold_123083 (764-627) | |
| 450-576, gnl|panTro1|chr20 (47733382-47733515) | |
| 450-576, gnl|rheMac2|chr19 (51787909-51788042) | |
| 450-576, gnl|rn3|chr1 (78987749-78987615) | |
| 450-576, gnl|tetNig1|chr16 (6607215-6607345) | |
| 450-576, gnl|xenTro1|scaffold_105 (785062-785188) |