Non-Coding RNA Search

Ss1.1-Pig1-57B13.5

Sequence:


               
               AGAGGAAGCTCGGCGGCTGTGGCCGCTGTGAGCAGGCCGGGCACCTCCTGGCTGACGGGG
CTTCCCCTAAAGCCGGCGAAGGCGGGGCCACAGTCGGAGCCGCCGCAGTATCTGGACCTA
CGGCGGAGCAAGTGCCGGCAGCGAGGGACGTAGACAATAAGGTGGTAGCCTCTCTTGCTT
CTGATGTCTGACCCCCTTGTGGCTGAAGTTGGTATGGGGGCTTGCTGCAAGCTTGCTGAT
GAAAGGAACTGGTGCCTGGCCACTGCTGCATCCAGATCTCATTATGCATCAGAAAAATGA
AAAAACAGAAGAAAATTCTATGGAGGAAAGGAATCCACTTAGCCTTTTCTGAGAGATGGA
ATACTGGGTTTGGAAGCTTTAAGAAATTCTGCTTTCACCAACACTTGTGCATTCTGAAAG
CCAAGTTGGGAAGGCCAGTTACTTGGAGCAGACATTTAAGGCATTTCCAGTGTAGAAAGA
AGGCCCTTCAAATCCAGAAAAAGTGGATCCAGCATGAACCGCTTTTTGCCAGGACAAAGT
CCAATGTGGCTGCTCAGAATCTTAGGACTTTGTCCTCTAAAGTGAAAAGAAAGGGCACTA
AAAACTTGAGTTCCTCCTCAAGGACCGTCCTGAAGCTCCAGGCAGAGAAGTTGCTGTCAT
CAGCAAAGAACTCTGACCATGAATACTGTGGAGAAAAAAGTTTTCTTGAAGGCAGTGGCT
GACTTACCAGAGAATAGTGTTTTAGGTCAGGCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGAAGCTCGGCGGCTGTGGCCGCTGTGAGCAGGCCGGGCACCTCCTGGCTGACGGGG
CTTCCCCTAAAGCCGGCGAAGGCGGGGCCACAGTCGGAGCCGCCGCAGTATCTGGACCTA
CGGCGGAGCAAGTGCCGGCAGCGAGGGACGTAGACAATAAGGTGGTAGCCTCTCTTGCTT
CTGATGTCTGACCCCCTTGTGGCTGAAGTTGGTATGGGGGCTTGCTGCAAGCTTGCTGAT
GAAAGGAACTGGTGCCTGGCCACTGCTGCATCCAGATCTCATTATGCATCAGAAAAATGA
AAAAACAGAAGAAAATTCTATGGAGGAAAGGAATCCACTTAGCCTTTTCTGAGAGATGGA
ATACTGGGTTTGGAAGCTTTAAGAAATTCTGCTTTCACCAACACTTGTGCATTCTGAAAG
CCAAGTTGGGAAGGCCAGTTACTTGGAGCAGACATTTAAGGCATTTCCAGTGTAGAAAGA
AGGCCCTTCAAATCCAGAAAAAGTGGATCCAGCATGAACCGCTTTTTGCCAGGACAAAGT
CCAATGTGGCTGCTCAGAATCTTAGGACTTTGTCCTCTAAAGTGAAAAGAAAGGGCACTA
AAAACTTGAGTTCCTCCTCAAGGACCGTCCTGAAGCTCCAGGCAGAGAAGTTGCTGTCAT
CAGCAAAGAACTCTGACCATGAATACTGTGGAGAAAAAAGTTTTCTTGAAGGCAGTGGCT
GACTTACCAGAGAATAGTGTTTTAGGTCAGGCTAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               262-380, - strand, RNAz p=0.511365
               

               
               581-756, - strand, RNAz p=0.617479

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-380, - strand, RNAz p=0.511365
               

               
               581-756, - strand, RNAz p=0.617479

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-153, gnl|bosTau2|chr1 (42981488-42981337)
               

               
               2-153, gnl|Hg17|chr3 (198083102-198083254)
               


               
               262-756, gnl|bosTau2|chr1 (42966638-42966145)
               

               
               262-756, gnl|Hg17|chr3 (198100328-198100821)
               

               
               262-756, gnl|Mm7|chr16 (31664994-31664504)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-153, gnl|bosTau2|chr1 (42981488-42981337)
               

               
               2-153, gnl|Hg17|chr3 (198083102-198083254)
               


               
               262-756, gnl|bosTau2|chr1 (42966638-42966145)
               

               
               262-756, gnl|Hg17|chr3 (198100328-198100821)
               

               
               262-756, gnl|Mm7|chr16 (31664994-31664504)

	262-380, - strand, RNAz p=0.511365
	581-756, - strand, RNAz p=0.617479

	2-153, gnl\|bosTau2\|chr1 (42981488-42981337)
	2-153, gnl\|Hg17\|chr3 (198083102-198083254)

	262-756, gnl\|bosTau2\|chr1 (42966638-42966145)
	262-756, gnl\|Hg17\|chr3 (198100328-198100821)
	262-756, gnl\|Mm7\|chr16 (31664994-31664504)