Non-Coding RNA Search

Ss1.1-Pig1-57C10.5

Sequence:


               
               GGGGAACAGCAGCTGGAGGCACTTAAACCAACAACCCCGGGTGGGGCTTGAAACTTTAGA
AATCTCGACTCCTCAAATCCTATCCACTCACACTGCCGTTGGAGAGAGAAAATGGAATAT
CCAGTAGCAGGATATTGTCTTTCAGGTCGCTGTACAAAAGTTATGGACAACCCCATAGTG
AATGGAATACATGCAGAGTGTGCCTTGCACACAAACTGTTTTGAATGCATCTCATTATTA
GCCATAGTTTCAAACATTATCAAATGGAACCAGTGAAGCTCTGAAGATGCAGACATTTAA
ACTACGAAGTTTAATATTTCACCACTTAACTTATTGAAAATCTCTGTGCTGTTTCATTGT
TGGTTTCCAAAAAAAGAGAGAAATGTTTATTTAATGCCTTTAAAATACCTTTAATTTATT
AGGATCTCAGAATCATTGTTTACTATCCCTTATTTGACAAAAAGTCAAATGTGTATGGTC
TACCTCCTATGGAAATGTTTACAAGGTCAAGACTTAATTCAATTCAGCCTAGACCAAAGT
TTCTTAACTTTCAATTTCTGTGCATTAGTATGATGATTTCTGTTACATAGCAGTATCCTG
AGTCTATGTAACTGAATGGAGATTAAAAATGCTTTACTTCAAAAAGATAGGAAGAAATAA
GTGTAGAATTTTTTTAAGGCTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAACAGCAGCTGGAGGCACTTAAACCAACAACCCCGGGTGGGGCTTGAAACTTTAGA
AATCTCGACTCCTCAAATCCTATCCACTCACACTGCCGTTGGAGAGAGAAAATGGAATAT
CCAGTAGCAGGATATTGTCTTTCAGGTCGCTGTACAAAAGTTATGGACAACCCCATAGTG
AATGGAATACATGCAGAGTGTGCCTTGCACACAAACTGTTTTGAATGCATCTCATTATTA
GCCATAGTTTCAAACATTATCAAATGGAACCAGTGAAGCTCTGAAGATGCAGACATTTAA
ACTACGAAGTTTAATATTTCACCACTTAACTTATTGAAAATCTCTGTGCTGTTTCATTGT
TGGTTTCCAAAAAAAGAGAGAAATGTTTATTTAATGCCTTTAAAATACCTTTAATTTATT
AGGATCTCAGAATCATTGTTTACTATCCCTTATTTGACAAAAAGTCAAATGTGTATGGTC
TACCTCCTATGGAAATGTTTACAAGGTCAAGACTTAATTCAATTCAGCCTAGACCAAAGT
TTCTTAACTTTCAATTTCTGTGCATTAGTATGATGATTTCTGTTACATAGCAGTATCCTG
AGTCTATGTAACTGAATGGAGATTAAAAATGCTTTACTTCAAAAAGATAGGAAGAAATAA
GTGTAGAATTTTTTTAAGGCTTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               504-650, - strand, RNAz p=0.620197

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               504-650, - strand, RNAz p=0.620197

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-684, gnl|bosTau2|chr9 (11982128-11981435)
               

               
               2-684, gnl|Hg17|chr6 (117359338-117360034)
               

               
               2-684, gnl|Mm7|chr10 (51544875-51545542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-684, gnl|bosTau2|chr9 (11982128-11981435)
               

               
               2-684, gnl|Hg17|chr6 (117359338-117360034)
               

               
               2-684, gnl|Mm7|chr10 (51544875-51545542)

	2-684, gnl\|bosTau2\|chr9 (11982128-11981435)
	2-684, gnl\|Hg17\|chr6 (117359338-117360034)
	2-684, gnl\|Mm7\|chr10 (51544875-51545542)