Non-Coding RNA Search

Ss1.1-Pig1-57N06.5

Sequence:


               
               GCGGCCGCCTCGCGCAGGTCACGTCCCCGGCCTGGGCCTGGCTGGCCCCCTCCGGGGCTC
AAGCCTTCAGGCCTCCGGCCCAGGCGAGGTACCCGGGAGGAGCCGGGACGGATGGGCGGG
CCCCTCCTGAGGCGGAGGCGGGGCAGGGCTGCGGGCCCTGGGGGCGGTGTGGCCCTGCAG
GGCACGACCGGGATCAGGACCGGCCTTAGGCTGCACGACGAAGCTGAGGTCTGAGCGTCG
CCCATCTCACAGCTGCCCCACTTTTCAGTGGAATACTCAGCCGGCGCCCTGGACTCAGTC
AGCCTTGCGATGGCTGCTTCTTAAAGCGGAGGGTAGGCAGCCTAGGCTGCGGACTTCTGG
AAGAGGATGGTGACGCCCTGGCGCTTCTCTGTCAGGGTCTGCTTGTCGCACCTAAGGGGT
TTTGAGCTCAGAAGGGAACTCGGCCTTCTGAGACCCGCTGGGTACTCTTGCAGGGCTAGA
CTCTGTTGGCTTCTGCTTGGCACTTTGCCCAAACTCGTCTCTGTCTCTGAAGACACTGGT
GGGGAGGGGGCCCCTGAGAGCTTGTGTCGGCAGAGGGCCCGCCGGAGTGTCCTGGCTGCA
CATGGGCCCCTGGGGACAGTCCCCCCAGAGGGACGGCTGGACGGTCTCCTTCTGCACCTG
CGGATCTGGCTCAGGGCGGGGGCCCTCCTGGTGAAATTCTTCCCCCTCCTTCTACTCTAC
CCCTTCACCTACCTGGCTCCCAGTGTCTCCAGTCTCTGGCTCTACCTGCTTCTGAAAGCC
ACCGAGACCTCTGGCCCAACGTACATCAAACTGGGCCAGTGGGCCAGCACCCGGCGGGAT
CTCTTCTCAGAGGCTTTCTGCGCCCAGTTCTCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCTCGCGCAGGTCACGTCCCCGGCCTGGGCCTGGCTGGCCCCCTCCGGGGCTC
AAGCCTTCAGGCCTCCGGCCCAGGCGAGGTACCCGGGAGGAGCCGGGACGGATGGGCGGG
CCCCTCCTGAGGCGGAGGCGGGGCAGGGCTGCGGGCCCTGGGGGCGGTGTGGCCCTGCAG
GGCACGACCGGGATCAGGACCGGCCTTAGGCTGCACGACGAAGCTGAGGTCTGAGCGTCG
CCCATCTCACAGCTGCCCCACTTTTCAGTGGAATACTCAGCCGGCGCCCTGGACTCAGTC
AGCCTTGCGATGGCTGCTTCTTAAAGCGGAGGGTAGGCAGCCTAGGCTGCGGACTTCTGG
AAGAGGATGGTGACGCCCTGGCGCTTCTCTGTCAGGGTCTGCTTGTCGCACCTAAGGGGT
TTTGAGCTCAGAAGGGAACTCGGCCTTCTGAGACCCGCTGGGTACTCTTGCAGGGCTAGA
CTCTGTTGGCTTCTGCTTGGCACTTTGCCCAAACTCGTCTCTGTCTCTGAAGACACTGGT
GGGGAGGGGGCCCCTGAGAGCTTGTGTCGGCAGAGGGCCCGCCGGAGTGTCCTGGCTGCA
CATGGGCCCCTGGGGACAGTCCCCCCAGAGGGACGGCTGGACGGTCTCCTTCTGCACCTG
CGGATCTGGCTCAGGGCGGGGGCCCTCCTGGTGAAATTCTTCCCCCTCCTTCTACTCTAC
CCCTTCACCTACCTGGCTCCCAGTGTCTCCAGTCTCTGGCTCTACCTGCTTCTGAAAGCC
ACCGAGACCTCTGGCCCAACGTACATCAAACTGGGCCAGTGGGCCAGCACCCGGCGGGAT
CTCTTCTCAGAGGCTTTCTGCGCCCAGTTCTCCAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               251-354, - strand, RNAz p=0.699407
               

               
               715-874, - strand, RNAz p=0.903724

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-354, - strand, RNAz p=0.699407
               

               
               715-874, - strand, RNAz p=0.903724

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               227-874, gnl|bosTau2|chr27 (12047390-12048049)
               

               
               227-874, gnl|Hg17|chr7 (139826067-139826819)
               

               
               227-874, gnl|Mm7|chr6 (39504272-39504830)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-874, gnl|bosTau2|chr27 (12047390-12048049)
               

               
               227-874, gnl|Hg17|chr7 (139826067-139826819)
               

               
               227-874, gnl|Mm7|chr6 (39504272-39504830)

	251-354, - strand, RNAz p=0.699407
	715-874, - strand, RNAz p=0.903724

	227-874, gnl\|bosTau2\|chr27 (12047390-12048049)
	227-874, gnl\|Hg17\|chr7 (139826067-139826819)
	227-874, gnl\|Mm7\|chr6 (39504272-39504830)