Non-Coding RNA Search

Ss1.1-Pig1-57N15.5

Sequence:


               
               GCCCACGCGTCCGCCCACGCGTCCGGGCTGTCTCCCTCTAAAAGGACTCACCAGCGCTCT
AAGTCAGATGCCACCGCCAGCATAAGTCTCAGCAGCAACCTGAAACGAACAGCCAGCAAC
CCTAAAGTGGAGAACGAGGACGAGCCCGTCAGACTGGCTCCTGAGCGGGAATTCATCAAG
TCCCTGATGGCGATTGGCAAGCGGCTGGCCACGCTCCCCACCAAGGAGCAGAAAACCCAG
CGACTGATCTCAGAGCTCTCCCTGCTCAACCATAAGCTCCCTGCCCGTGTCTGGCTGCCC
ACTGCTGGCTTTGACCACCACGTGGTCCGCGTGCCCCACACCCAGGCTGTTGTCCTCAAC
TCTAAGGACAAGGCTCCCTACCTGATCTATGTGGAAGTCCTCGAATGTGAAAACTTCGAC
ACCACCAATGTCCCCGCCCGGATCCCCGAGAACCGAATTCGGAGCACCCGGTCTGTAGAG
AATCTGCCCGAGTGCGGCATCACCCACGAGCAGCGGGCAGGCAGCTTCAGCACGGTGCCC
AACTATGACAACGATGACGAGGCCTGGTCCGTGGATGATATAGGCGAGCTGCAGGTGGAG
CTCCCTGAAATGCACACCAACAGCTGTGACAACATCTCCCAGTTCTCCGTGGACAGCATC
ACCAGCCAAGAGAGCAAGGAGCCTGTGTTCATTGCAGCAGGTGACATCCGACGGCGCCTT
TCGGAGCAGCTGGCTCACACCCCCACAGCCTTCAGACGAGACCCAGAAGACCCTTCTGCA
GTGGCCCTCAAAGAGCCCTGGCAGGAGAAAGTGCGGCGCATCAGAGAGGGCTCCCCCTAT
GGCCATCTCCCCAATTGGCGGCTCCTGTCAGTCATTGTCAAGTGTGGGGATGATCTTCGA
CAGGAGTTGCTGGCCTTCCAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGCCCACGCGTCCGGGCTGTCTCCCTCTAAAAGGACTCACCAGCGCTCT
AAGTCAGATGCCACCGCCAGCATAAGTCTCAGCAGCAACCTGAAACGAACAGCCAGCAAC
CCTAAAGTGGAGAACGAGGACGAGCCCGTCAGACTGGCTCCTGAGCGGGAATTCATCAAG
TCCCTGATGGCGATTGGCAAGCGGCTGGCCACGCTCCCCACCAAGGAGCAGAAAACCCAG
CGACTGATCTCAGAGCTCTCCCTGCTCAACCATAAGCTCCCTGCCCGTGTCTGGCTGCCC
ACTGCTGGCTTTGACCACCACGTGGTCCGCGTGCCCCACACCCAGGCTGTTGTCCTCAAC
TCTAAGGACAAGGCTCCCTACCTGATCTATGTGGAAGTCCTCGAATGTGAAAACTTCGAC
ACCACCAATGTCCCCGCCCGGATCCCCGAGAACCGAATTCGGAGCACCCGGTCTGTAGAG
AATCTGCCCGAGTGCGGCATCACCCACGAGCAGCGGGCAGGCAGCTTCAGCACGGTGCCC
AACTATGACAACGATGACGAGGCCTGGTCCGTGGATGATATAGGCGAGCTGCAGGTGGAG
CTCCCTGAAATGCACACCAACAGCTGTGACAACATCTCCCAGTTCTCCGTGGACAGCATC
ACCAGCCAAGAGAGCAAGGAGCCTGTGTTCATTGCAGCAGGTGACATCCGACGGCGCCTT
TCGGAGCAGCTGGCTCACACCCCCACAGCCTTCAGACGAGACCCAGAAGACCCTTCTGCA
GTGGCCCTCAAAGAGCCCTGGCAGGAGAAAGTGCGGCGCATCAGAGAGGGCTCCCCCTAT
GGCCATCTCCCCAATTGGCGGCTCCTGTCAGTCATTGTCAAGTGTGGGGATGATCTTCGA
CAGGAGTTGCTGGCCTTCCAGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               182-341, - strand, RNAz p=0.949589

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-341, - strand, RNAz p=0.949589

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               227-317, - strand, RNAmicro p=0.999542

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               227-317, - strand, RNAmicro p=0.999542

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               143-373, gnl|bosTau2|chr3 (16246806-16247036)
               

               
               143-373, gnl|canFam2|chr17 (63448413-63448691)
               

               
               143-373, gnl|danRer3|chr16 (34687032-34686768)
               

               
               143-373, gnl|dasNov1|scaffold_154153 (3397-3117)
               

               
               143-373, gnl|echTel1|scaffold_316629 (71950-71693)
               

               
               143-373, gnl|fr1|chrUn (152582694-152582424)
               

               
               143-373, gnl|galGal2|chrUn (96999568-96999857)
               

               
               143-373, gnl|hg17|chr1 (148093079-148093360)
               

               
               143-373, gnl|Hg17|chr1 (148093352-148093122)
               

               
               143-373, gnl|loxAfr1|scaffold_19720 (21527-21807)
               

               
               143-373, gnl|mm7|chr3 (94867186-94866907)
               

               
               143-373, gnl|Mm7|chr3 (94866913-94867143)
               

               
               143-373, gnl|monDom2|scaffold_44 (4490344-4490617)
               

               
               143-373, gnl|oryCun1|scaffold_195040 (59055-58774)
               

               
               143-373, gnl|panTro1|chr1 (129845349-129845630)
               

               
               143-373, gnl|rheMac2|chr1 (129743132-129743413)
               

               
               143-373, gnl|rn3|chr2 (189852054-189851776)
               

               
               143-373, gnl|tetNig1|chrUn_random (46920210-46920469)
               

               
               143-373, gnl|xenTro1|scaffold_485 (508273-508529)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-373, gnl|bosTau2|chr3 (16246806-16247036)
               

               
               143-373, gnl|canFam2|chr17 (63448413-63448691)
               

               
               143-373, gnl|danRer3|chr16 (34687032-34686768)
               

               
               143-373, gnl|dasNov1|scaffold_154153 (3397-3117)
               

               
               143-373, gnl|echTel1|scaffold_316629 (71950-71693)
               

               
               143-373, gnl|fr1|chrUn (152582694-152582424)
               

               
               143-373, gnl|galGal2|chrUn (96999568-96999857)
               

               
               143-373, gnl|hg17|chr1 (148093079-148093360)
               

               
               143-373, gnl|Hg17|chr1 (148093352-148093122)
               

               
               143-373, gnl|loxAfr1|scaffold_19720 (21527-21807)
               

               
               143-373, gnl|mm7|chr3 (94867186-94866907)
               

               
               143-373, gnl|Mm7|chr3 (94866913-94867143)
               

               
               143-373, gnl|monDom2|scaffold_44 (4490344-4490617)
               

               
               143-373, gnl|oryCun1|scaffold_195040 (59055-58774)
               

               
               143-373, gnl|panTro1|chr1 (129845349-129845630)
               

               
               143-373, gnl|rheMac2|chr1 (129743132-129743413)
               

               
               143-373, gnl|rn3|chr2 (189852054-189851776)
               

               
               143-373, gnl|tetNig1|chrUn_random (46920210-46920469)
               

               
               143-373, gnl|xenTro1|scaffold_485 (508273-508529)

	143-373, gnl\|bosTau2\|chr3 (16246806-16247036)
	143-373, gnl\|canFam2\|chr17 (63448413-63448691)
	143-373, gnl\|danRer3\|chr16 (34687032-34686768)
	143-373, gnl\|dasNov1\|scaffold_154153 (3397-3117)
	143-373, gnl\|echTel1\|scaffold_316629 (71950-71693)
	143-373, gnl\|fr1\|chrUn (152582694-152582424)
	143-373, gnl\|galGal2\|chrUn (96999568-96999857)
	143-373, gnl\|hg17\|chr1 (148093079-148093360)
	143-373, gnl\|Hg17\|chr1 (148093352-148093122)
	143-373, gnl\|loxAfr1\|scaffold_19720 (21527-21807)
	143-373, gnl\|mm7\|chr3 (94867186-94866907)
	143-373, gnl\|Mm7\|chr3 (94866913-94867143)
	143-373, gnl\|monDom2\|scaffold_44 (4490344-4490617)
	143-373, gnl\|oryCun1\|scaffold_195040 (59055-58774)
	143-373, gnl\|panTro1\|chr1 (129845349-129845630)
	143-373, gnl\|rheMac2\|chr1 (129743132-129743413)
	143-373, gnl\|rn3\|chr2 (189852054-189851776)
	143-373, gnl\|tetNig1\|chrUn_random (46920210-46920469)
	143-373, gnl\|xenTro1\|scaffold_485 (508273-508529)