Ss1.1-Pig1-58C18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGGACTCTCCGTGCACTACAGCCAGGACAGCAGCCTCATCTACTGGTTCAACGGCAC CCAAGCTGTGCAGGTGCCCCTGGGTGGCACAGCTGGGCTGGGCTCGGGGCCCCAGGACAG CCTCAGTGACCATTTTACCCTGTCCTTCTGGATGAAGCATGGCGTGACTCCCAACAAGGG CAAGAAGGAAGAGGAAACCATTGTGTGTAACACGGTCCAGAATGAGGACGGCTTCTCTCA CTACTCACTGACTGTCCATGGCTGCAGAATTGCCTTCCTTTACTGGCCTCTGCTTGAAAG TGCTCGGCCAGTCAAGTTTCTCTGGAAGCTGGAGCAGGTCTGCGATGACGAGTGGCACCA CTATGCCTTGAACCTTGAGTTCCCCACAGTCACACTCTATGCTGATGGCATCTCCTTTGA CCCTGCCCTCATCCACGACAATGGACTCATCCACCCTCCCCGAAGGGAGCCTGCACTCAT GATTGGGGCCTGTTGGGCCGAGGAGAAGAACAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGGACTCTCCGTGCACTACAGCCAGGACAGCAGCCTCATCTACTGGTTCAACGGCAC CCAAGCTGTGCAGGTGCCCCTGGGTGGCACAGCTGGGCTGGGCTCGGGGCCCCAGGACAG CCTCAGTGACCATTTTACCCTGTCCTTCTGGATGAAGCATGGCGTGACTCCCAACAAGGG CAAGAAGGAAGAGGAAACCATTGTGTGTAACACGGTCCAGAATGAGGACGGCTTCTCTCA CTACTCACTGACTGTCCATGGCTGCAGAATTGCCTTCCTTTACTGGCCTCTGCTTGAAAG TGCTCGGCCAGTCAAGTTTCTCTGGAAGCTGGAGCAGGTCTGCGATGACGAGTGGCACCA CTATGCCTTGAACCTTGAGTTCCCCACAGTCACACTCTATGCTGATGGCATCTCCTTTGA CCCTGCCCTCATCCACGACAATGGACTCATCCACCCTCCCCGAAGGGAGCCTGCACTCAT GATTGGGGCCTGTTGGGCCGAGGAGAAGAACAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-159, - strand, RNAz p=0.684533 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, - strand, RNAz p=0.684533 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 41-161, - strand, RNAmicro p=0.998772 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-292, gnl|bosTau2|chr5 (60027298-60027013) | |
| 1-292, gnl|canFam2|chr27 (40927938-40927699) | |
| 1-292, gnl|danRer3|chr16 (6635953-6635734) | |
| 1-292, gnl|dasNov1|scaffold_33133 (8849-9052) | |
| 1-292, gnl|echTel1|scaffold_315533 (1326-1096) | |
| 1-292, gnl|fr1|chrUn (75002434-75002647) | |
| 1-292, gnl|galGal2|chr1 (71499923-71500144) | |
| 1-292, gnl|hg17|chr12 (7180684-7180923) | |
| 1-292, gnl|Hg17|chr12 (7180750-7181032) | |
| 1-292, gnl|loxAfr1|scaffold_5174 (43347-43586) | |
| 1-292, gnl|mm7|chr6 (124440180-124439941) | |
| 1-292, gnl|Mm7|chr6 (124440112-124439842) | |
| 1-292, gnl|monDom2|scaffold_31 (15717832-15718071) | |
| 1-292, gnl|oryCun1|scaffold_185407 (20416-20177) | |
| 1-292, gnl|panTro1|chr10 (7745361-7745600) | |
| 1-292, gnl|rheMac2|chr11 (7443356-7443595) | |
| 1-292, gnl|rn3|chr4 (160903812-160903573) | |
| 1-292, gnl|tetNig1|chr8 (9073559-9073784) | |
| 1-292, gnl|xenTro1|scaffold_811 (311202-311426) | |
| 335-498, gnl|bosTau2|chr5 (60023089-60022926) | |
| 335-498, gnl|canFam2|chr27 (40924275-40924105) | |
| 335-498, gnl|danRer3|chr16 (6632747-6632580) | |
| 335-498, gnl|dasNov1|scaffold_171561 (6811-6981) | |
| 335-498, gnl|echTel1|scaffold_281168 (70800-70630) | |
| 335-498, gnl|fr1|chrUn (75003911-75004078) | |
| 335-498, gnl|galGal2|chr1 (71500624-71500794) | |
| 335-498, gnl|hg17|chr12 (7185103-7185273) | |
| 335-498, gnl|Hg17|chr12 (7185102-7185265) | |
| 335-498, gnl|loxAfr1|scaffold_5174 (47329-47499) | |
| 335-498, gnl|mm7|chr6 (124433580-124433410) | |
| 335-498, gnl|Mm7|chr6 (124433579-124433416) | |
| 335-498, gnl|monDom2|scaffold_31 (15720243-15720413) | |
| 335-498, gnl|oryCun1|scaffold_185407 (16071-15901) | |
| 335-498, gnl|panTro1|chr10 (7749772-7749942) | |
| 335-498, gnl|rheMac2|chr11 (7447755-7447925) | |
| 335-498, gnl|rn3|chr4 (160896540-160896370) | |
| 335-498, gnl|tetNig1|chr8 (9074849-9075016) | |
| 335-498, gnl|xenTro1|scaffold_811 (312455-312625) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-292, gnl|bosTau2|chr5 (60027298-60027013) | |
| 1-292, gnl|canFam2|chr27 (40927938-40927699) | |
| 1-292, gnl|danRer3|chr16 (6635953-6635734) | |
| 1-292, gnl|dasNov1|scaffold_33133 (8849-9052) | |
| 1-292, gnl|echTel1|scaffold_315533 (1326-1096) | |
| 1-292, gnl|fr1|chrUn (75002434-75002647) | |
| 1-292, gnl|galGal2|chr1 (71499923-71500144) | |
| 1-292, gnl|hg17|chr12 (7180684-7180923) | |
| 1-292, gnl|Hg17|chr12 (7180750-7181032) | |
| 1-292, gnl|loxAfr1|scaffold_5174 (43347-43586) | |
| 1-292, gnl|mm7|chr6 (124440180-124439941) | |
| 1-292, gnl|Mm7|chr6 (124440112-124439842) | |
| 1-292, gnl|monDom2|scaffold_31 (15717832-15718071) | |
| 1-292, gnl|oryCun1|scaffold_185407 (20416-20177) | |
| 1-292, gnl|panTro1|chr10 (7745361-7745600) | |
| 1-292, gnl|rheMac2|chr11 (7443356-7443595) | |
| 1-292, gnl|rn3|chr4 (160903812-160903573) | |
| 1-292, gnl|tetNig1|chr8 (9073559-9073784) | |
| 1-292, gnl|xenTro1|scaffold_811 (311202-311426) | |
| 335-498, gnl|bosTau2|chr5 (60023089-60022926) | |
| 335-498, gnl|canFam2|chr27 (40924275-40924105) | |
| 335-498, gnl|danRer3|chr16 (6632747-6632580) | |
| 335-498, gnl|dasNov1|scaffold_171561 (6811-6981) | |
| 335-498, gnl|echTel1|scaffold_281168 (70800-70630) | |
| 335-498, gnl|fr1|chrUn (75003911-75004078) | |
| 335-498, gnl|galGal2|chr1 (71500624-71500794) | |
| 335-498, gnl|hg17|chr12 (7185103-7185273) | |
| 335-498, gnl|Hg17|chr12 (7185102-7185265) | |
| 335-498, gnl|loxAfr1|scaffold_5174 (47329-47499) | |
| 335-498, gnl|mm7|chr6 (124433580-124433410) | |
| 335-498, gnl|Mm7|chr6 (124433579-124433416) | |
| 335-498, gnl|monDom2|scaffold_31 (15720243-15720413) | |
| 335-498, gnl|oryCun1|scaffold_185407 (16071-15901) | |
| 335-498, gnl|panTro1|chr10 (7749772-7749942) | |
| 335-498, gnl|rheMac2|chr11 (7447755-7447925) | |
| 335-498, gnl|rn3|chr4 (160896540-160896370) | |
| 335-498, gnl|tetNig1|chr8 (9074849-9075016) | |
| 335-498, gnl|xenTro1|scaffold_811 (312455-312625) |