Ss1.1-Pig1-58D01.5
|
GAGAAAGAAAAAGAAAAAAAAGAAAGTCCAAACCTCGCCTGGATCTCTGTTCTCAGGCAG
AAAGTGGTCTGCTCCCAAAACCCTATTCACTGATAAAATCTCTCAAATTAAAAGATCTCT
CAGTCTCTTCTAGAATCACACTGTCAGGAAGTTCTCCTTCCTGTCTAGCTTTAATCCCTC
CTGTTTTTAGCTGAAGTAGATTTCCTGTTGTTTAGCTATATTTCTAAAACCTGAGAGCCG
AGAAGCCTAAACAGTGGTGGTTGCTCAGGAGCCTGTCACTTTTTTGGTCGAGCTACAACC
CGTTTGTACAGACACCCAGCTCCCCTGATGCTGTGACACCTCTCGTGCCTTCTTACTGGC
TGTTTGTGTGCATGCATGTGTGCTTGCATGCGTGCCACCGTGTGCACACACACACACGTA
TGTGTTTCTCTCTCCCCGCTCCAGGTCCCCAGGTCCCGACCTGGCCTTCCTGACTTCCTG
TCCTGACAAGAACAAAGTCCATTTCAACCCGACCGGCTCGGCCTTCTGCCCTGTCAGCCT
GATGAAGCCCCTCTTCCCCAGCATGGGCTTCATCTTCCGTAACTGCCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GAGAAAGAAAAAGAAAAAAAAGAAAGTCCAAACCTCGCCTGGATCTCTGTTCTCAGGCAG
AAAGTGGTCTGCTCCCAAAACCCTATTCACTGATAAAATCTCTCAAATTAAAAGATCTCT
CAGTCTCTTCTAGAATCACACTGTCAGGAAGTTCTCCTTCCTGTCTAGCTTTAATCCCTC
CTGTTTTTAGCTGAAGTAGATTTCCTGTTGTTTAGCTATATTTCTAAAACCTGAGAGCCG
AGAAGCCTAAACAGTGGTGGTTGCTCAGGAGCCTGTCACTTTTTTGGTCGAGCTACAACC
CGTTTGTACAGACACCCAGCTCCCCTGATGCTGTGACACCTCTCGTGCCTTCTTACTGGC
TGTTTGTGTGCATGCATGTGTGCTTGCATGCGTGCCACCGTGTGCACACACACACACGTA
TGTGTTTCTCTCTCCCCGCTCCAGGTCCCCAGGTCCCGACCTGGCCTTCCTGACTTCCTG
TCCTGACAAGAACAAAGTCCATTTCAACCCGACCGGCTCGGCCTTCTGCCCTGTCAGCCT
GATGAAGCCCCTCTTCCCCAGCATGGGCTTCATCTTCCGTAACTGCCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
20-369, gnl|bosTau2|chr19 (29676631-29676974) |
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20-369, gnl|Hg17|chr17 (45144534-45143943) |
| |
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418-588, gnl|bosTau2|chr19 (29676973-29677143) |
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418-588, gnl|canFam2|chr9 (29103947-29104110) |
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418-588, gnl|danRer3|chr3 (12206415-12206246) |
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418-588, gnl|dasNov1|scaffold_2789 (44372-44535) |
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418-588, gnl|echTel1|scaffold_190781 (2651-2815) |
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418-588, gnl|fr1|chrUn (140042744-140042902) |
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418-588, gnl|galGal2|chrUn (84997140-84997313) |
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418-588, gnl|hg17|chr17 (45143723-45143886) |
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418-588, gnl|Hg17|chr17 (45143944-45143773) |
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418-588, gnl|loxAfr1|scaffold_146211 (5122-5285) |
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418-588, gnl|mm7|chr11 (95489893-95489733) |
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418-588, gnl|Mm7|chr11 (95489676-95489844) |
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418-588, gnl|monDom2|scaffold_18 (43944822-43944650) |
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418-588, gnl|oryCun1|scaffold_166347 (3343-3198) |
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418-588, gnl|panTro1|chr19_random (30749982-30750145) |
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418-588, gnl|rheMac2|chr16 (33944391-33944554) |
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418-588, gnl|rn3|chr10 (84080396-84080233) |
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418-588, gnl|tetNig1|chr3 (13629158-13629303) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
20-369, gnl|bosTau2|chr19 (29676631-29676974) |
|
20-369, gnl|Hg17|chr17 (45144534-45143943) |
| |
|
418-588, gnl|bosTau2|chr19 (29676973-29677143) |
|
418-588, gnl|canFam2|chr9 (29103947-29104110) |
|
418-588, gnl|danRer3|chr3 (12206415-12206246) |
|
418-588, gnl|dasNov1|scaffold_2789 (44372-44535) |
|
418-588, gnl|echTel1|scaffold_190781 (2651-2815) |
|
418-588, gnl|fr1|chrUn (140042744-140042902) |
|
418-588, gnl|galGal2|chrUn (84997140-84997313) |
|
418-588, gnl|hg17|chr17 (45143723-45143886) |
|
418-588, gnl|Hg17|chr17 (45143944-45143773) |
|
418-588, gnl|loxAfr1|scaffold_146211 (5122-5285) |
|
418-588, gnl|mm7|chr11 (95489893-95489733) |
|
418-588, gnl|Mm7|chr11 (95489676-95489844) |
|
418-588, gnl|monDom2|scaffold_18 (43944822-43944650) |
|
418-588, gnl|oryCun1|scaffold_166347 (3343-3198) |
|
418-588, gnl|panTro1|chr19_random (30749982-30750145) |
|
418-588, gnl|rheMac2|chr16 (33944391-33944554) |
|
418-588, gnl|rn3|chr10 (84080396-84080233) |
|
418-588, gnl|tetNig1|chr3 (13629158-13629303) |
