Non-Coding RNA Search

Ss1.1-Pig1-59I16.5

Sequence:


               
               GGGGGAGGCTCCGACGTCTCCTTCCTTCCTGGTTCCTGCAGCAGCTGCTGCCACTGCTCA
GCTCTGTGAGCAGGGAGCTGGTGGCTCGGAGACGGTGACTCAGAGACGGAGCGGTGCGCG
GGCCAAGGAGCACGGGCGTCCATGGACCCTGGGGGCCCCCTCAGGACAAGGTGACATCCT
TCCCCTTCCACCCTGCTCTCCGTCCTCAGCAGGGAGTGGCCACTCCCTTCTCCATGGACT
TCCAGGAGCGGGACCCTCCCTCCTTGGCTGAGAGCACTCAGTCTGCAAAGCCCAGCAGTG
CCCAGCAGGCCTCCGAGCTGTGGGAGGTGGTGGAGGAGGCTCGGGGCCGGCTGGGTGCAG
AGGGTATCATGCCAGAGAGACAGGAAGGCCACCTGCTCAAGAAGAGGAAGTGGCCTCTGA
AGGGCTGGCACAAGAGATACTTTGTGCTGGAGGACGGGATCCTTCGCTATGCCACCACAC
GGCAAGATATCACCAAGGGGAAGCTCCATGGCTCCATCAATGTCCGACTGTCGGTCATGT
CCATCAACAAAAAGGCCCAGCGCATTGACCTTGACACTGAAGACAACATCTACCACCTCA
AGATCAAATCCCAGGACCTGTTCCAGAGCTGGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGAGGCTCCGACGTCTCCTTCCTTCCTGGTTCCTGCAGCAGCTGCTGCCACTGCTCA
GCTCTGTGAGCAGGGAGCTGGTGGCTCGGAGACGGTGACTCAGAGACGGAGCGGTGCGCG
GGCCAAGGAGCACGGGCGTCCATGGACCCTGGGGGCCCCCTCAGGACAAGGTGACATCCT
TCCCCTTCCACCCTGCTCTCCGTCCTCAGCAGGGAGTGGCCACTCCCTTCTCCATGGACT
TCCAGGAGCGGGACCCTCCCTCCTTGGCTGAGAGCACTCAGTCTGCAAAGCCCAGCAGTG
CCCAGCAGGCCTCCGAGCTGTGGGAGGTGGTGGAGGAGGCTCGGGGCCGGCTGGGTGCAG
AGGGTATCATGCCAGAGAGACAGGAAGGCCACCTGCTCAAGAAGAGGAAGTGGCCTCTGA
AGGGCTGGCACAAGAGATACTTTGTGCTGGAGGACGGGATCCTTCGCTATGCCACCACAC
GGCAAGATATCACCAAGGGGAAGCTCCATGGCTCCATCAATGTCCGACTGTCGGTCATGT
CCATCAACAAAAAGGCCCAGCGCATTGACCTTGACACTGAAGACAACATCTACCACCTCA
AGATCAAATCCCAGGACCTGTTCCAGAGCTGGGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55154425|gb|AAH85242.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55154425|gb|AAH85242.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-304, - strand, RNAz p=0.998704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-304, - strand, RNAz p=0.998704

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               153-346, gnl|bosTau2|chr19 (30699390-30699579)
               

               
               153-346, gnl|Hg17|chr17 (43252731-43252533)
               

               
               153-346, gnl|Mm7|chr11 (97161263-97161448)
               


               
               489-611, gnl|bosTau2|chr19 (30700617-30700739)
               

               
               489-611, gnl|Hg17|chr17 (43251464-43251342)
               

               
               489-611, gnl|Mm7|chr11 (97163154-97163276)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-346, gnl|bosTau2|chr19 (30699390-30699579)
               

               
               153-346, gnl|Hg17|chr17 (43252731-43252533)
               

               
               153-346, gnl|Mm7|chr11 (97161263-97161448)
               


               
               489-611, gnl|bosTau2|chr19 (30700617-30700739)
               

               
               489-611, gnl|Hg17|chr17 (43251464-43251342)
               

               
               489-611, gnl|Mm7|chr11 (97163154-97163276)

	153-346, gnl\|bosTau2\|chr19 (30699390-30699579)
	153-346, gnl\|Hg17\|chr17 (43252731-43252533)
	153-346, gnl\|Mm7\|chr11 (97161263-97161448)

	489-611, gnl\|bosTau2\|chr19 (30700617-30700739)
	489-611, gnl\|Hg17\|chr17 (43251464-43251342)
	489-611, gnl\|Mm7\|chr11 (97163154-97163276)