Non-Coding RNA Search

Ss1.1-Pig1-59P01.5

Sequence:


               
               ATGGAAAGCCTAAAGTCTATCTGGTCCAGTTCCATGATGCATCCTGGACCTTCCGCTTTG
GAGCAGCTGTTAATGCAGCAGAAGCAGAAACAGCAGCGGGGACAAGGCACCATGAACCCT
CCACACTGAGGCCAAAGTGGCATCCCTGGGAATGAAGGCTCCATAAACCATGGCATGTTG
GGTTTGCAGGACTGGCCCACACAGTCCCCTGCAGGTGGCAGCCCTCTTTTCTGTTTCTTG
CTGTTGAGAGGGTGTAAGTGTTCCACCAGCCCGCTGAGTGTGCACGAAATGTCTGCAGTG
CAACAAAAAGAAAAAACCATCAGGAACTCTCCGTCCCCCCGGGCCTTCCGGAGGGAGAGA
GGAACTGCTGTTTGTCTCACTCAGTTACCTGATGTCACCGCCTCTCACCTTCTCCACCGT
GCATGTCCCCAGCCACATGGGAAGTGAAAGCTGAGAAGGGAAGGCAGATGGGAGAAGCCA
ATGGGAACTTCTCAGTCCTTTTTTCCTCTTTGGGGAATAAAATAGGAATCCATTAATGAT
TGCTTTGCTGACTGAGAATGTAGTTGAAATTATTCCTGAACATCTTTTATTATTATTATT
ATTACTCCCAGTAGTAAATATCACACTGAATTCTTCCATACACAGATGTGCTTCTTCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAAAGCCTAAAGTCTATCTGGTCCAGTTCCATGATGCATCCTGGACCTTCCGCTTTG
GAGCAGCTGTTAATGCAGCAGAAGCAGAAACAGCAGCGGGGACAAGGCACCATGAACCCT
CCACACTGAGGCCAAAGTGGCATCCCTGGGAATGAAGGCTCCATAAACCATGGCATGTTG
GGTTTGCAGGACTGGCCCACACAGTCCCCTGCAGGTGGCAGCCCTCTTTTCTGTTTCTTG
CTGTTGAGAGGGTGTAAGTGTTCCACCAGCCCGCTGAGTGTGCACGAAATGTCTGCAGTG
CAACAAAAAGAAAAAACCATCAGGAACTCTCCGTCCCCCCGGGCCTTCCGGAGGGAGAGA
GGAACTGCTGTTTGTCTCACTCAGTTACCTGATGTCACCGCCTCTCACCTTCTCCACCGT
GCATGTCCCCAGCCACATGGGAAGTGAAAGCTGAGAAGGGAAGGCAGATGGGAGAAGCCA
ATGGGAACTTCTCAGTCCTTTTTTCCTCTTTGGGGAATAAAATAGGAATCCATTAATGAT
TGCTTTGCTGACTGAGAATGTAGTTGAAATTATTCCTGAACATCTTTTATTATTATTATT
ATTACTCCCAGTAGTAAATATCACACTGAATTCTTCCATACACAGATGTGCTTCTTCTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               53-643, - strand, RNAz p=0.918627

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-643, - strand, RNAz p=0.918627

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               302-415, - strand, RNAmicro p=0.999988

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               302-415, - strand, RNAmicro p=0.999988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-660, gnl|bosTau2|chr16 (46285197-46285841)
               

               
               14-660, gnl|Hg17|chr1 (180252608-180253250)
               

               
               14-660, gnl|Mm7|chr1 (152800457-152799827)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-660, gnl|bosTau2|chr16 (46285197-46285841)
               

               
               14-660, gnl|Hg17|chr1 (180252608-180253250)
               

               
               14-660, gnl|Mm7|chr1 (152800457-152799827)

	14-660, gnl\|bosTau2\|chr16 (46285197-46285841)
	14-660, gnl\|Hg17\|chr1 (180252608-180253250)
	14-660, gnl\|Mm7\|chr1 (152800457-152799827)