Ss1.1-Pig1-60K09.5
               |  | GCTCTGTTGTATTTCGGCGAAGGAGGGGCTGGGGCTCGGGGAGGTGACTAACTAGCATGC
CTGAAGTCACACAGTTATCAGGTTGAAAATTATTATTTGACTCTAAGTCTGCCATCAATT
------------------------------------------------------------
------------------------------------TTTTTAAAATTAATTCTAAGACAT
ACAGGTTTTAACTATCCCAAGTTTTTAAATCCGAGCTCCTTTCACGTGTTTAAGCTCTGG
GTATTGACCACACTGAGTTCATGGCAGTCATTACACTATTTACTAAGCGTTTGCTTTGGT
TGATGTGGGCAGTGAGTTGAACCCAGATCACTTAAACAGTTGAGTAAATTGTGCCTTTCT
CCTTCTGTTAATTTCTCAGCTAACAGCCTGAGAGAAGATTACAAATTGTACCACACTTTC
AGCACTGAAATAGCAAAGTTCTTGAAAGTCTCCCCAGACAAGTTGGTCGTCATGCAACCT
GAGAAATTCCAATCCAAATACGAGCCTCAGAGCCACGTGCTGCACATCCAGGGCTCCACA
GAGGCCTCCGCCATCAAGGAGCACGTGCTGAAGTACACCTTTGCCGTGGCCGACGAAGAG
GACTTCGCCACGGAGGTGAAGGACCTGGGGCTCAGTGAGAGCGGCGAGGAGGTGAACGCA
GCCATCCTGGAC | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | GCTCTGTTGTATTTCGGCGAAGGAGGGGCTGGGGCTCGGGGAGGTGACTAACTAGCATGC
CTGAAGTCACACAGTTATCAGGTTGAAAATTATTATTTGACTCTAAGTCTGCCATCAATT
------------------------------------------------------------
------------------------------------TTTTTAAAATTAATTCTAAGACAT
ACAGGTTTTAACTATCCCAAGTTTTTAAATCCGAGCTCCTTTCACGTGTTTAAGCTCTGG
GTATTGACCACACTGAGTTCATGGCAGTCATTACACTATTTACTAAGCGTTTGCTTTGGT
TGATGTGGGCAGTGAGTTGAACCCAGATCACTTAAACAGTTGAGTAAATTGTGCCTTTCT
CCTTCTGTTAATTTCTCAGCTAACAGCCTGAGAGAAGATTACAAATTGTACCACACTTTC
AGCACTGAAATAGCAAAGTTCTTGAAAGTCTCCCCAGACAAGTTGGTCGTCATGCAACCT
GAGAAATTCCAATCCAAATACGAGCCTCAGAGCCACGTGCTGCACATCCAGGGCTCCACA
GAGGCCTCCGCCATCAAGGAGCACGTGCTGAAGTACACCTTTGCCGTGGCCGACGAAGAG
GACTTCGCCACGGAGGTGAAGGACCTGGGGCTCAGTGAGAGCGGCGAGGAGGTGAACGCA
GCCATCCTGGAC | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map