Ss1.1-Pig1-60O23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCCAGAGCCATGTGGCACAGACTGCTTCCTTTTGCTGGAAGGAGCAAAGGAGTACGC CATGCTCCACAACCCTCGCTCCAAGTGCTCAGGGCGTGGCCGGCGAAGGCACCACGTGGT CAGCGCTTCCTGCTCCAACACTTCAGGCGGTGGTGTGGCTGAGACTAAAGAAGGGGACAG TGACAGGGACACTGGCAATGACTGGGCCTCCAGTTCTTCAGAGGCTAATTCTCGCTGTCA GACCCCCACAAAGCAGAAGGCTAGTCCAGCCCCACCTCAGCTCTGCGTAGTGGAAGCGCC CTCAGAGCCCGTGGAGTGGACCGGGGCTGAAGAATCTCTTTTTCGAGTCTTCCATGGCAC CTACTTCAACAACTTCTGTTCGATAGCTAGGCTTCTGGGGACTAAGACATGCAAGCAGGT CTTCCAGTTCGCAGTGAAAGAATCACTTATCCTGAAGCTGCCAACAGATGAGCTCATGAA CCCCTCGCAGAAGAAGAAGAGAAAGCACAGGTTGTGGGCTGCACACTGCAGGAAAATTCA GCTGAAGAAAGATAACTCCTCCACCCAAGTGTACAACTACCAACCGTGCGACCACCCGGA CCGCCCCTGTGACAGCACCTGTCCCTGCATCATGACTCAGAATTTCTGTGAGAAGTTCTG CCAGTGCAACCCTGACTGTCAGAATCGCTTTCCTGGCTGTCGCTGTAAGACCCAGTGCAA TACCAAGCAGTGCCCATGCTACCTGGCGGTGCGAGAGTGTGACCCCGACCTGTGTCTCAC CTGTGGTGCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCCAGAGCCATGTGGCACAGACTGCTTCCTTTTGCTGGAAGGAGCAAAGGAGTACGC CATGCTCCACAACCCTCGCTCCAAGTGCTCAGGGCGTGGCCGGCGAAGGCACCACGTGGT CAGCGCTTCCTGCTCCAACACTTCAGGCGGTGGTGTGGCTGAGACTAAAGAAGGGGACAG TGACAGGGACACTGGCAATGACTGGGCCTCCAGTTCTTCAGAGGCTAATTCTCGCTGTCA GACCCCCACAAAGCAGAAGGCTAGTCCAGCCCCACCTCAGCTCTGCGTAGTGGAAGCGCC CTCAGAGCCCGTGGAGTGGACCGGGGCTGAAGAATCTCTTTTTCGAGTCTTCCATGGCAC CTACTTCAACAACTTCTGTTCGATAGCTAGGCTTCTGGGGACTAAGACATGCAAGCAGGT CTTCCAGTTCGCAGTGAAAGAATCACTTATCCTGAAGCTGCCAACAGATGAGCTCATGAA CCCCTCGCAGAAGAAGAAGAGAAAGCACAGGTTGTGGGCTGCACACTGCAGGAAAATTCA GCTGAAGAAAGATAACTCCTCCACCCAAGTGTACAACTACCAACCGTGCGACCACCCGGA CCGCCCCTGTGACAGCACCTGTCCCTGCATCATGACTCAGAATTTCTGTGAGAAGTTCTG CCAGTGCAACCCTGACTGTCAGAATCGCTTTCCTGGCTGTCGCTGTAAGACCCAGTGCAA TACCAAGCAGTGCCCATGCTACCTGGCGGTGCGAGAGTGTGACCCCGACCTGTGTCTCAC CTGTGGTGCCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 255-374, - strand, RNAz p=0.690495 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 255-374, - strand, RNAz p=0.690495 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 215-420, gnl|bosTau2|chr19 (39002860-39003064) | |
| 215-420, gnl|canFam2|chr9 (23600746-23600582) | |
| 215-420, gnl|danRer3|chr3 (32780656-32780507) | |
| 215-420, gnl|dasNov1|scaffold_9958 (58569-58733) | |
| 215-420, gnl|echTel1|scaffold_274116 (2554-2391) | |
| 215-420, gnl|fr1|chrUn (22802603-22802733) | |
| 215-420, gnl|galGal2|chr27_random (176688-176524) | |
| 215-420, gnl|hg17|chr17 (38117830-38117994) | |
| 215-420, gnl|Hg17|chr17 (38118035-38117831) | |
| 215-420, gnl|loxAfr1|scaffold_30398 (10254-10090) | |
| 215-420, gnl|mm7|chr11 (101312291-101312455) | |
| 215-420, gnl|Mm7|chr11 (101312496-101312292) | |
| 215-420, gnl|monDom2|scaffold_18 (53196334-53196498) | |
| 215-420, gnl|oryCun1|scaffold_206438 (6005-5841) | |
| 215-420, gnl|panTro1|chr19 (41303524-41303688) | |
| 215-420, gnl|rheMac2|chr16 (52835371-52835535) | |
| 215-420, gnl|rn3|chr10 (90237442-90237606) | |
| 215-420, gnl|tetNig1|chr3 (12442355-12442505) | |
| 215-420, gnl|xenTro1|scaffold_92 (912945-912783) | |
| 550-706, gnl|bosTau2|chr19 (39006563-39006718) | |
| 550-706, gnl|Hg17|chr17 (38113629-38113475) | |
| 550-706, gnl|Mm7|chr11 (101308424-101308270) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 215-420, gnl|bosTau2|chr19 (39002860-39003064) | |
| 215-420, gnl|canFam2|chr9 (23600746-23600582) | |
| 215-420, gnl|danRer3|chr3 (32780656-32780507) | |
| 215-420, gnl|dasNov1|scaffold_9958 (58569-58733) | |
| 215-420, gnl|echTel1|scaffold_274116 (2554-2391) | |
| 215-420, gnl|fr1|chrUn (22802603-22802733) | |
| 215-420, gnl|galGal2|chr27_random (176688-176524) | |
| 215-420, gnl|hg17|chr17 (38117830-38117994) | |
| 215-420, gnl|Hg17|chr17 (38118035-38117831) | |
| 215-420, gnl|loxAfr1|scaffold_30398 (10254-10090) | |
| 215-420, gnl|mm7|chr11 (101312291-101312455) | |
| 215-420, gnl|Mm7|chr11 (101312496-101312292) | |
| 215-420, gnl|monDom2|scaffold_18 (53196334-53196498) | |
| 215-420, gnl|oryCun1|scaffold_206438 (6005-5841) | |
| 215-420, gnl|panTro1|chr19 (41303524-41303688) | |
| 215-420, gnl|rheMac2|chr16 (52835371-52835535) | |
| 215-420, gnl|rn3|chr10 (90237442-90237606) | |
| 215-420, gnl|tetNig1|chr3 (12442355-12442505) | |
| 215-420, gnl|xenTro1|scaffold_92 (912945-912783) | |
| 550-706, gnl|bosTau2|chr19 (39006563-39006718) | |
| 550-706, gnl|Hg17|chr17 (38113629-38113475) | |
| 550-706, gnl|Mm7|chr11 (101308424-101308270) |