Non-Coding RNA Search

Ss1.1-Pig1-61F08.5

Sequence:


               
               AACTTATTCTCCTGCAACAGTTAAACGCTCAGCGAGAGTTTGGTTTCCTGTGTGACTGCA
CGGTTGCCATCGGCGATGTGTACTTCAAGGCACACAAATCAGTTCTTGCTTCATTCTCCA
ATTACTTTAAGATGTTGTTTGTCCATCAGACCAGTGAGTGTGTCCGTTTGAAACCCACTG
ACATCCAGCCAGACATCTTCAGCTATCTGCTGCATCTGATGTACACGGGAAAGATGGCGC
CGCAGCTGATCGATCCCGTTCGATTAGAGCAGGGGATCAAGTTTCTGCATGCTTACCCGC
TGATCCAGGAGGCCAGCCTGGCCAGCCAAGGAGCCTTTTCTCATCCCGACCAAGTTTTCC
CGCTGGCTTCCTCCTTGTATGGCATTCAGATTGCAGATCATCAGTTAAGACAAGCCACCA
AGATTGCTTCGGCACCTGACAAACTTGGCCGCGAGGCCCGGCCGCAACCCCCCAGGATGA
GCCAGGAACAGGTGCCTGAGGCCTCGCAGCTCTCCCAGCTGCCTGCAAACCTGACCCAGG
TGAATCGGACTCACATGACCCCCTCGGACCCGCTGCAGACCTCGCTGTCGCCCGACCTCG
TCTCCACGCCCGTCCCCCCGCCTCCCCCCGGGGAGGAGACCAACCTGGAAGCCTCCTCCT
CTGACGAACAGCCCGCATCCCTGACCATAGCCCACGTGAAGCCGAGCATCATGAAGAGGA
ACGGGAGCTTCCCCAAGTACTACGCCTGCCACCTGTGCGGGCGGCGCTTCACGCTCCGGA
GCAGCTTGCGGGAGCACCTCCAGATTCACACGGGGGTGCCCTTCCCAGCCAGCCAGCCCG
GCGAGAGCCGCGTGCCCCTGTCGCTCTGCAGCACCACGGCGGACCTGGGCAAAGACGCCA
TGGAAGTGCCTGAAGCGGGGATGATCAGCGACAGCGAGCTGCAGCACATCTCGGATTCGC
CCATCATCGACGGGCAGCCGCACTCGGAGACGCCGCCGCCCTCGGACATCGCGGACATTG
ACAACCTGGAGCAGGCGGACCAGGAGCGGGAGGTCAAGCGGCGCAAATACGAGTGCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTATTCTCCTGCAACAGTTAAACGCTCAGCGAGAGTTTGGTTTCCTGTGTGACTGCA
CGGTTGCCATCGGCGATGTGTACTTCAAGGCACACAAATCAGTTCTTGCTTCATTCTCCA
ATTACTTTAAGATGTTGTTTGTCCATCAGACCAGTGAGTGTGTCCGTTTGAAACCCACTG
ACATCCAGCCAGACATCTTCAGCTATCTGCTGCATCTGATGTACACGGGAAAGATGGCGC
CGCAGCTGATCGATCCCGTTCGATTAGAGCAGGGGATCAAGTTTCTGCATGCTTACCCGC
TGATCCAGGAGGCCAGCCTGGCCAGCCAAGGAGCCTTTTCTCATCCCGACCAAGTTTTCC
CGCTGGCTTCCTCCTTGTATGGCATTCAGATTGCAGATCATCAGTTAAGACAAGCCACCA
AGATTGCTTCGGCACCTGACAAACTTGGCCGCGAGGCCCGGCCGCAACCCCCCAGGATGA
GCCAGGAACAGGTGCCTGAGGCCTCGCAGCTCTCCCAGCTGCCTGCAAACCTGACCCAGG
TGAATCGGACTCACATGACCCCCTCGGACCCGCTGCAGACCTCGCTGTCGCCCGACCTCG
TCTCCACGCCCGTCCCCCCGCCTCCCCCCGGGGAGGAGACCAACCTGGAAGCCTCCTCCT
CTGACGAACAGCCCGCATCCCTGACCATAGCCCACGTGAAGCCGAGCATCATGAAGAGGA
ACGGGAGCTTCCCCAAGTACTACGCCTGCCACCTGTGCGGGCGGCGCTTCACGCTCCGGA
GCAGCTTGCGGGAGCACCTCCAGATTCACACGGGGGTGCCCTTCCCAGCCAGCCAGCCCG
GCGAGAGCCGCGTGCCCCTGTCGCTCTGCAGCACCACGGCGGACCTGGGCAAAGACGCCA
TGGAAGTGCCTGAAGCGGGGATGATCAGCGACAGCGAGCTGCAGCACATCTCGGATTCGC
CCATCATCGACGGGCAGCCGCACTCGGAGACGCCGCCGCCCTCGGACATCGCGGACATTG
ACAACCTGGAGCAGGCGGACCAGGAGCGGGAGGTCAAGCGGCGCAAATACGAGTGCACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50742555|ref|XP_419674.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50742555|ref|XP_419674.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               551-710, - strand, RNAz p=0.677319

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               551-710, - strand, RNAz p=0.677319

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-1080, gnl|bosTau2|chr9 (52921352-52922280)
               

               
               152-1080, gnl|Hg17|chr6 (151780144-151779216)
               

               
               152-1080, gnl|Mm7|chr10 (5977323-5978251)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-1080, gnl|bosTau2|chr9 (52921352-52922280)
               

               
               152-1080, gnl|Hg17|chr6 (151780144-151779216)
               

               
               152-1080, gnl|Mm7|chr10 (5977323-5978251)

	152-1080, gnl\|bosTau2\|chr9 (52921352-52922280)
	152-1080, gnl\|Hg17\|chr6 (151780144-151779216)
	152-1080, gnl\|Mm7\|chr10 (5977323-5978251)