Non-Coding RNA Search

Ss1.1-Pig1-61J08.5

Sequence:


               
               GCAAAGAGCAGTGACCAGCCTTCTCTGTGCGTCCTGCCCCCACCTCCCAGAGAAACAGCC
CATCCTGCTACATCTCTCCCGTAAAGCGATCAGTGCTTCAGATGGAGCCCCTCTCCTCTG
GATTGTACATTACCTGCCAAGTGAAGACCCTTCAGCGCGTCCTGCCCCCACCTCCCAGAG
AAACAGGAGAGCTCAAGGGATGGCCGCTGACATGCAGAGGAAGAGAAGCAGCGAATGCCC
TGATGGCATGTTGGCTCCTTCTGATGGGCAGAGTGTGGAGAGGGCTGAGAGTCCCACACC
AGGACTGGCCCAGGGAATGGAGCCAGGTGCCGGGCAGGAGGGTGCCATGTTCGTCCATGC
CCGTTCCTATGAGGACCTGACTGAATCAGAGGACGGGGCGGCTTCTGGGGAGAGCCCCAA
GGAGGGTGCTGGGGGTCCCCCACCACTGCCTACAGACATGCGCCAGATCAGCCAGGACTT
CAGTGAGCTGAGCACCCAGCTGACAGGTGTCGCCCGAGATCTTCAGGAGGAGATGCTTCC
AGGAAGCTCTGAGGACTGGCCGGAGTCCCCAGGGGCAGCCGGGCGGCCGGCCACAGAACC
CCCAAGGGAGGGCACTGGTGAAGGGGATGAGGAAGAAGCTGCTGAGGCATGGAGACTGCA
CCAGAAGCATGTCTTCGTGCTGAGTGAGGCGGGGAAGCCTGTGTACTCCCGCTATGGGTC
AGAGGAGGCACTTTCCAGCACCATGGGTGTCATGGTGGCCCTGGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAGAGCAGTGACCAGCCTTCTCTGTGCGTCCTGCCCCCACCTCCCAGAGAAACAGCC
CATCCTGCTACATCTCTCCCGTAAAGCGATCAGTGCTTCAGATGGAGCCCCTCTCCTCTG
GATTGTACATTACCTGCCAAGTGAAGACCCTTCAGCGCGTCCTGCCCCCACCTCCCAGAG
AAACAGGAGAGCTCAAGGGATGGCCGCTGACATGCAGAGGAAGAGAAGCAGCGAATGCCC
TGATGGCATGTTGGCTCCTTCTGATGGGCAGAGTGTGGAGAGGGCTGAGAGTCCCACACC
AGGACTGGCCCAGGGAATGGAGCCAGGTGCCGGGCAGGAGGGTGCCATGTTCGTCCATGC
CCGTTCCTATGAGGACCTGACTGAATCAGAGGACGGGGCGGCTTCTGGGGAGAGCCCCAA
GGAGGGTGCTGGGGGTCCCCCACCACTGCCTACAGACATGCGCCAGATCAGCCAGGACTT
CAGTGAGCTGAGCACCCAGCTGACAGGTGTCGCCCGAGATCTTCAGGAGGAGATGCTTCC
AGGAAGCTCTGAGGACTGGCCGGAGTCCCCAGGGGCAGCCGGGCGGCCGGCCACAGAACC
CCCAAGGGAGGGCACTGGTGAAGGGGATGAGGAAGAAGCTGCTGAGGCATGGAGACTGCA
CCAGAAGCATGTCTTCGTGCTGAGTGAGGCGGGGAAGCCTGTGTACTCCCGCTATGGGTC
AGAGGAGGCACTTTCCAGCACCATGGGTGTCATGGTGGCCCTGGTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               220-338, + strand, RNAz p=0.983313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-338, + strand, RNAz p=0.983313

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK092018, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK092018, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               183-338, gnl|bosTau2|chr22 (38230311-38230157)
               

               
               183-338, gnl|Hg17|chr3 (49925800-49925646)
               

               
               183-338, gnl|Mm7|chr9 (107630326-107630480)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-338, gnl|bosTau2|chr22 (38230311-38230157)
               

               
               183-338, gnl|Hg17|chr3 (49925800-49925646)
               

               
               183-338, gnl|Mm7|chr9 (107630326-107630480)

	183-338, gnl\|bosTau2\|chr22 (38230311-38230157)
	183-338, gnl\|Hg17\|chr3 (49925800-49925646)
	183-338, gnl\|Mm7\|chr9 (107630326-107630480)