Non-Coding RNA Search

Ss1.1-Pig1-61N03.5

Sequence:


               
               TGCAAATCCCTGGAAGTACTGAATTGATTAACATTTTACACCTGCTCCGTTCATATTTTA
TAAAATATCTAGAGAAATACTGGCATTAAAGGATCCTTGTTGAATGGTGGAAATCAGATC
CCTAACCAGTAGGAAGGGCTTTTTGGGTGGCTTGTACATTCTCACCAATTGTATGCTAAT
TTATTATGTTCCTTTGTGCTCTAGGCAGCACACTTGCCTTCTATTTATTTAAATGTAAAC
ATTTCAAAGCAGGCCATATTCCTTCTGACAAATTTCCTGTAAACCAGGATTGCCTACCCT
TTCCACCTCCCACCTTCCCCCTTCTCCTTTTAAGGAAACTTATGAGAAAATGTTTCGTTG
TGAAACAGAGGAAAAGAAACATTTTCTGGCCCAAAGGAAATGTTCAGTTATGTTCAGGAA
AACAAATTATTCATATGATGCTATCGTAACATTGAAATTGCACATTCGGTGTTGGACTGA
GACTTTGAAAATAGCCTTTACATGCTTTTGTTTAACCTCCCTTTGAAATGTATAAAAAGT
TCATTTAAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAATCCCTGGAAGTACTGAATTGATTAACATTTTACACCTGCTCCGTTCATATTTTA
TAAAATATCTAGAGAAATACTGGCATTAAAGGATCCTTGTTGAATGGTGGAAATCAGATC
CCTAACCAGTAGGAAGGGCTTTTTGGGTGGCTTGTACATTCTCACCAATTGTATGCTAAT
TTATTATGTTCCTTTGTGCTCTAGGCAGCACACTTGCCTTCTATTTATTTAAATGTAAAC
ATTTCAAAGCAGGCCATATTCCTTCTGACAAATTTCCTGTAAACCAGGATTGCCTACCCT
TTCCACCTCCCACCTTCCCCCTTCTCCTTTTAAGGAAACTTATGAGAAAATGTTTCGTTG
TGAAACAGAGGAAAAGAAACATTTTCTGGCCCAAAGGAAATGTTCAGTTATGTTCAGGAA
AACAAATTATTCATATGATGCTATCGTAACATTGAAATTGCACATTCGGTGTTGGACTGA
GACTTTGAAAATAGCCTTTACATGCTTTTGTTTAACCTCCCTTTGAAATGTATAAAAAGT
TCATTTAAGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               265-377, - strand, RNAz p=0.932113

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-377, - strand, RNAz p=0.932113

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-546, gnl|bosTau2|chr9 (7490203-7489649)
               

               
               1-546, gnl|Hg17|chr11 (75939272-75939831)
               

               
               1-546, gnl|Mm7|chr7 (94622169-94621647)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-546, gnl|bosTau2|chr9 (7490203-7489649)
               

               
               1-546, gnl|Hg17|chr11 (75939272-75939831)
               

               
               1-546, gnl|Mm7|chr7 (94622169-94621647)

	1-546, gnl\|bosTau2\|chr9 (7490203-7489649)
	1-546, gnl\|Hg17\|chr11 (75939272-75939831)
	1-546, gnl\|Mm7\|chr7 (94622169-94621647)