Ss1.1-Pig1-62C01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTCGCTCCTGACTGGGAAGGTTGTTTGCAAGTCAGGATTGGGTTGCAGGTCAGAGGGA CCCATGCGGAGAATCAGGAAGGCAGAGCTGTGCACGGGGCTGCTCCCTAGGACCTGAGCT GGAACCAGAGCTTTCAGCATGCTGTCCTGCTCATCTGTGTGTTGGTTCAACGTTTCTGTT TCCTTGGAAGATGGAAGGCTCTGATACTGGGCTCTCCTGCAGCTGTCACTCACCCCCTGC CATCCACACCCCTCCCTGGGGGAGGCGATGTCCCCGAGGGAACAGAGGTCTTCGGTCCCA TCTTAAGCCCTGCTGGCTCCCGCGTGACATCAGCAGCCCCCTCGCTGCCACCCTCCTGCT GGGAGTTCCGAGCTGGGTGCTGGGCCCGGGCTGGCGCCAGGCACAGACACTTCGGCCCTT GTTGGGAGAACAGAGAGGCTCTCTTGTCCACTGCCCATCCTCCGGCTCCAACTGCTCGTT CTCCCAGCAGCGTTCTCCCAGGCTGTGCAGCCCACCTGATCACTGTTACAGGATGGACTC CAGCCCAGCTGGAACCCCAAGTCCGCAGCCCCCGAGGGCCAACAGGAATATCAACCTCGG GCCTTCTGCCAACCCAAATGCCCGGCCCACCGACTTCGACTTCCTCAAAGTCATTGGCAA AGGAAACTATGGAAAGGTCCTACTGGCCAAGCACAAGTCAGACGGGATGTTCTACGCGGT GAAGGTGCTGCAGAAAAAGTCCATCCTAAAGAAGAAAGAGCAGGGCCACATCATGGCTGA GCGCAGCGTGCTGCTGAAGAACGTGCGGCACCCCTTCCTCGTGGGCCTGCGCTACTCCTT CCAGACGCCTGAGAAGCTCTACTTCGTGCTCGACTATGTCAACGGGGGAGAGCTCTTCTT CCACCTGCAGCGGGAGCGCCGGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTCGCTCCTGACTGGGAAGGTTGTTTGCAAGTCAGGATTGGGTTGCAGGTCAGAGGGA CCCATGCGGAGAATCAGGAAGGCAGAGCTGTGCACGGGGCTGCTCCCTAGGACCTGAGCT GGAACCAGAGCTTTCAGCATGCTGTCCTGCTCATCTGTGTGTTGGTTCAACGTTTCTGTT TCCTTGGAAGATGGAAGGCTCTGATACTGGGCTCTCCTGCAGCTGTCACTCACCCCCTGC CATCCACACCCCTCCCTGGGGGAGGCGATGTCCCCGAGGGAACAGAGGTCTTCGGTCCCA TCTTAAGCCCTGCTGGCTCCCGCGTGACATCAGCAGCCCCCTCGCTGCCACCCTCCTGCT GGGAGTTCCGAGCTGGGTGCTGGGCCCGGGCTGGCGCCAGGCACAGACACTTCGGCCCTT GTTGGGAGAACAGAGAGGCTCTCTTGTCCACTGCCCATCCTCCGGCTCCAACTGCTCGTT CTCCCAGCAGCGTTCTCCCAGGCTGTGCAGCCCACCTGATCACTGTTACAGGATGGACTC CAGCCCAGCTGGAACCCCAAGTCCGCAGCCCCCGAGGGCCAACAGGAATATCAACCTCGG GCCTTCTGCCAACCCAAATGCCCGGCCCACCGACTTCGACTTCCTCAAAGTCATTGGCAA AGGAAACTATGGAAAGGTCCTACTGGCCAAGCACAAGTCAGACGGGATGTTCTACGCGGT GAAGGTGCTGCAGAAAAAGTCCATCCTAAAGAAGAAAGAGCAGGGCCACATCATGGCTGA GCGCAGCGTGCTGCTGAAGAACGTGCGGCACCCCTTCCTCGTGGGCCTGCGCTACTCCTT CCAGACGCCTGAGAAGCTCTACTTCGTGCTCGACTATGTCAACGGGGGAGAGCTCTTCTT CCACCTGCAGCGGGAGCGCCGGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-118, + strand, RNAz p=0.980072 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-118, + strand, RNAz p=0.980072 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC006523, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr13 (52770877-52770752) | |
| 1-126, gnl|canFam2|chr24 (34244351-34244855) | |
| 1-126, gnl|echTel1|scaffold_288459 (2848-3380) | |
| 1-126, gnl|hg17|chr20 (41620895-41621384) | |
| 1-126, gnl|Hg17|chr20 (41621076-41621201) | |
| 1-126, gnl|loxAfr1|scaffold_114259 (921-357) | |
| 1-126, gnl|mm7|chr2 (162728190-162728674) | |
| 1-126, gnl|Mm7|chr2 (162728366-162728473) | |
| 1-126, gnl|oryCun1|scaffold_175429 (49044-48555) | |
| 1-126, gnl|panTro1|chr21 (44059953-44060442) | |
| 1-126, gnl|rheMac2|chr10 (20893334-20892845) | |
| 1-126, gnl|rn3|chr3 (153755831-153756315) | |
| 211-510, gnl|bosTau2|chr13 (52765247-52764958) | |
| 211-510, gnl|Hg17|chr20 (41627052-41627340) | |
| 211-510, gnl|Mm7|chr2 (162732267-162732550) | |
| 759-892, gnl|bosTau2|chr13 (52761058-52760925) | |
| 759-892, gnl|canFam2|chr24 (34252811-34252993) | |
| 759-892, gnl|danRer3|chr23 (1429123-1429277) | |
| 759-892, gnl|echTel1|scaffold_318640 (79772-79596) | |
| 759-892, gnl|fr1|chrUn (151763639-151763462) | |
| 759-892, gnl|galGal2|chr20 (3472589-3472430) | |
| 759-892, gnl|hg17|chr20 (41631408-41631592) | |
| 759-892, gnl|Hg17|chr20 (41631437-41631570) | |
| 759-892, gnl|loxAfr1|scaffold_5164 (33788-33605) | |
| 759-892, gnl|mm7|chr2 (162736548-162736719) | |
| 759-892, gnl|Mm7|chr2 (162736575-162736708) | |
| 759-892, gnl|monDom2|scaffold_6 (9902799-9902630) | |
| 759-892, gnl|oryCun1|scaffold_175429 (43095-42923) | |
| 759-892, gnl|panTro1|chr21 (44070459-44070643) | |
| 759-892, gnl|rheMac2|chr10 (20882833-20882649) | |
| 759-892, gnl|rn3|chr3 (153779981-153780150) | |
| 759-892, gnl|tetNig1|chr9 (1028819-1028660) | |
| 759-892, gnl|xenTro1|scaffold_35 (143147-143283) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr13 (52770877-52770752) | |
| 1-126, gnl|canFam2|chr24 (34244351-34244855) | |
| 1-126, gnl|echTel1|scaffold_288459 (2848-3380) | |
| 1-126, gnl|hg17|chr20 (41620895-41621384) | |
| 1-126, gnl|Hg17|chr20 (41621076-41621201) | |
| 1-126, gnl|loxAfr1|scaffold_114259 (921-357) | |
| 1-126, gnl|mm7|chr2 (162728190-162728674) | |
| 1-126, gnl|Mm7|chr2 (162728366-162728473) | |
| 1-126, gnl|oryCun1|scaffold_175429 (49044-48555) | |
| 1-126, gnl|panTro1|chr21 (44059953-44060442) | |
| 1-126, gnl|rheMac2|chr10 (20893334-20892845) | |
| 1-126, gnl|rn3|chr3 (153755831-153756315) | |
| 211-510, gnl|bosTau2|chr13 (52765247-52764958) | |
| 211-510, gnl|Hg17|chr20 (41627052-41627340) | |
| 211-510, gnl|Mm7|chr2 (162732267-162732550) | |
| 759-892, gnl|bosTau2|chr13 (52761058-52760925) | |
| 759-892, gnl|canFam2|chr24 (34252811-34252993) | |
| 759-892, gnl|danRer3|chr23 (1429123-1429277) | |
| 759-892, gnl|echTel1|scaffold_318640 (79772-79596) | |
| 759-892, gnl|fr1|chrUn (151763639-151763462) | |
| 759-892, gnl|galGal2|chr20 (3472589-3472430) | |
| 759-892, gnl|hg17|chr20 (41631408-41631592) | |
| 759-892, gnl|Hg17|chr20 (41631437-41631570) | |
| 759-892, gnl|loxAfr1|scaffold_5164 (33788-33605) | |
| 759-892, gnl|mm7|chr2 (162736548-162736719) | |
| 759-892, gnl|Mm7|chr2 (162736575-162736708) | |
| 759-892, gnl|monDom2|scaffold_6 (9902799-9902630) | |
| 759-892, gnl|oryCun1|scaffold_175429 (43095-42923) | |
| 759-892, gnl|panTro1|chr21 (44070459-44070643) | |
| 759-892, gnl|rheMac2|chr10 (20882833-20882649) | |
| 759-892, gnl|rn3|chr3 (153779981-153780150) | |
| 759-892, gnl|tetNig1|chr9 (1028819-1028660) | |
| 759-892, gnl|xenTro1|scaffold_35 (143147-143283) |