Non-Coding RNA Search

Ss1.1-Pig1-62D04.5

Sequence:


               
               CCGAGACCTCCGTGCTGCCAACATCCTGGTTGGAGAGAACCTCGCGTGCAAAGTGGCCGA
CTTCGGGCTGGCTCGGCTCATCGAAGACAATGAGTACACAGCTCGGCAAGGTGCCAAATT
CCCCATCAAGTGGACGGCTCCAGAAGCTGCCCTCTATGGCCGGTTCACCATCAAGTCCGA
CGTGTGGTCCTTTGGGATCCTGCTGACGGAGCTCACAACCAAGGGACGGGTGCCCTACCC
TGGGATGGTGAACCGCGAGGTGCTGGACCAGGTGGAGCGGGGCTACCGGATGCCCTGTCC
GCCTGAGTGTCCCGAGTCTCTGCATGACCTCATGTGCCAGTGCTGGCGGAAGGACCCGGA
GGAACGGCCCACCTTCGAGTACCTGCAGGCCTTCCTGGAGGACTACTTCACGTCCACCGA
GCCCCAGTACCAGCCCGGAGAGAACCTATAGGGTACAGGCTACAGGGCCAGACTGCCTTC
TCAGCTTGGATCCTGGGTTGGGTGGCCCCTGACATGGGGTCTCGCCTCCCTCTGCCTGCC
CGCCATTGATCCTCTCTCAGGGGCCAAGGACAAGGCCCCTCCGTCTTTTGTGGCATGGAA
GGGCTTGGGGCCCCGGGCAGCCCTGGGGGCGGGGTCTGAGGCTGGCGCAGTGACTGTGTC
CGGGCCTCCGCCCAGCCACCCGCCTTCTCCCTGCACGCCCTCCCTGAGCTCTGCGCATCT
CAGCAGGAGGAACTGGGAAGAAGGGCTGGGGCTGAGGGCGCCCTTTTCTTAGCCTCGCCC
TAATCCACACACTGGCTCCTTCCCACTTCCACGCCTCTCCCAGGTCTGTCTGCAGAGCTG
GCCCAAGAGCCTTTCCAAAGAGGAGTGATGGGCCCCTGGCCCTTGGCCTACCTGCCACCC
TACTTGCCGTCCATTTCTGAAAGACCCGTTGGTGGAGGCCACTGGGTCCAGACCCCTGTG
CTGTGGCTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAGACCTCCGTGCTGCCAACATCCTGGTTGGAGAGAACCTCGCGTGCAAAGTGGCCGA
CTTCGGGCTGGCTCGGCTCATCGAAGACAATGAGTACACAGCTCGGCAAGGTGCCAAATT
CCCCATCAAGTGGACGGCTCCAGAAGCTGCCCTCTATGGCCGGTTCACCATCAAGTCCGA
CGTGTGGTCCTTTGGGATCCTGCTGACGGAGCTCACAACCAAGGGACGGGTGCCCTACCC
TGGGATGGTGAACCGCGAGGTGCTGGACCAGGTGGAGCGGGGCTACCGGATGCCCTGTCC
GCCTGAGTGTCCCGAGTCTCTGCATGACCTCATGTGCCAGTGCTGGCGGAAGGACCCGGA
GGAACGGCCCACCTTCGAGTACCTGCAGGCCTTCCTGGAGGACTACTTCACGTCCACCGA
GCCCCAGTACCAGCCCGGAGAGAACCTATAGGGTACAGGCTACAGGGCCAGACTGCCTTC
TCAGCTTGGATCCTGGGTTGGGTGGCCCCTGACATGGGGTCTCGCCTCCCTCTGCCTGCC
CGCCATTGATCCTCTCTCAGGGGCCAAGGACAAGGCCCCTCCGTCTTTTGTGGCATGGAA
GGGCTTGGGGCCCCGGGCAGCCCTGGGGGCGGGGTCTGAGGCTGGCGCAGTGACTGTGTC
CGGGCCTCCGCCCAGCCACCCGCCTTCTCCCTGCACGCCCTCCCTGAGCTCTGCGCATCT
CAGCAGGAGGAACTGGGAAGAAGGGCTGGGGCTGAGGGCGCCCTTTTCTTAGCCTCGCCC
TAATCCACACACTGGCTCCTTCCCACTTCCACGCCTCTCCCAGGTCTGTCTGCAGAGCTG
GCCCAAGAGCCTTTCCAAAGAGGAGTGATGGGCCCCTGGCCCTTGGCCTACCTGCCACCC
TACTTGCCGTCCATTTCTGAAAGACCCGTTGGTGGAGGCCACTGGGTCCAGACCCCTGTG
CTGTGGCTCCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47220719|emb|CAG11788.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47220719|emb|CAG11788.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               441-810, + strand, RNAz p=0.892727

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-810, + strand, RNAz p=0.892727

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC051270, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC051270, +

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               1-113, gnl|bosTau2|chr13 (49326653-49326541)
               

               
               1-113, gnl|canFam2|chr24 (28987837-28988004)
               

               
               1-113, gnl|danRer3|chr18 (19389719-19389555)
               

               
               1-113, gnl|dasNov1|scaffold_128174 (4284-4117)
               

               
               1-113, gnl|echTel1|scaffold_243420 (2894-3061)
               

               
               1-113, gnl|fr1|chrUn (40133536-40133708)
               

               
               1-113, gnl|galGal2|chr20 (4818651-4818818)
               

               
               1-113, gnl|hg17|chr20 (35464242-35464409)
               

               
               1-113, gnl|Hg17|chr20 (35464296-35464408)
               

               
               1-113, gnl|loxAfr1|scaffold_79541 (4799-4640)
               

               
               1-113, gnl|mm7|chr2 (157210008-157210172)
               

               
               1-113, gnl|Mm7|chr2 (157210059-157210171)
               

               
               1-113, gnl|monDom2|scaffold_6 (2183897-2183730)
               

               
               1-113, gnl|oryCun1|scaffold_213597 (93947-94113)
               

               
               1-113, gnl|panTro1|chr21 (37787354-37787521)
               

               
               1-113, gnl|rheMac2|chr10 (27059680-27059513)
               

               
               1-113, gnl|rn3|chr3 (148075183-148075347)
               

               
               1-113, gnl|tetNig1|chr6 (4456212-4456045)
               

               
               1-113, gnl|xenTro1|scaffold_637 (275589-275747)
               


               
               242-972, gnl|bosTau2|chr13 (49325953-49325229)
               

               
               242-972, gnl|Hg17|chr20 (35464987-35465731)
               

               
               242-972, gnl|Mm7|chr2 (157210642-157211322)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-113, gnl|bosTau2|chr13 (49326653-49326541)
               

               
               1-113, gnl|canFam2|chr24 (28987837-28988004)
               

               
               1-113, gnl|danRer3|chr18 (19389719-19389555)
               

               
               1-113, gnl|dasNov1|scaffold_128174 (4284-4117)
               

               
               1-113, gnl|echTel1|scaffold_243420 (2894-3061)
               

               
               1-113, gnl|fr1|chrUn (40133536-40133708)
               

               
               1-113, gnl|galGal2|chr20 (4818651-4818818)
               

               
               1-113, gnl|hg17|chr20 (35464242-35464409)
               

               
               1-113, gnl|Hg17|chr20 (35464296-35464408)
               

               
               1-113, gnl|loxAfr1|scaffold_79541 (4799-4640)
               

               
               1-113, gnl|mm7|chr2 (157210008-157210172)
               

               
               1-113, gnl|Mm7|chr2 (157210059-157210171)
               

               
               1-113, gnl|monDom2|scaffold_6 (2183897-2183730)
               

               
               1-113, gnl|oryCun1|scaffold_213597 (93947-94113)
               

               
               1-113, gnl|panTro1|chr21 (37787354-37787521)
               

               
               1-113, gnl|rheMac2|chr10 (27059680-27059513)
               

               
               1-113, gnl|rn3|chr3 (148075183-148075347)
               

               
               1-113, gnl|tetNig1|chr6 (4456212-4456045)
               

               
               1-113, gnl|xenTro1|scaffold_637 (275589-275747)
               


               
               242-972, gnl|bosTau2|chr13 (49325953-49325229)
               

               
               242-972, gnl|Hg17|chr20 (35464987-35465731)
               

               
               242-972, gnl|Mm7|chr2 (157210642-157211322)

	1-113, gnl\|bosTau2\|chr13 (49326653-49326541)
	1-113, gnl\|canFam2\|chr24 (28987837-28988004)
	1-113, gnl\|danRer3\|chr18 (19389719-19389555)
	1-113, gnl\|dasNov1\|scaffold_128174 (4284-4117)
	1-113, gnl\|echTel1\|scaffold_243420 (2894-3061)
	1-113, gnl\|fr1\|chrUn (40133536-40133708)
	1-113, gnl\|galGal2\|chr20 (4818651-4818818)
	1-113, gnl\|hg17\|chr20 (35464242-35464409)
	1-113, gnl\|Hg17\|chr20 (35464296-35464408)
	1-113, gnl\|loxAfr1\|scaffold_79541 (4799-4640)
	1-113, gnl\|mm7\|chr2 (157210008-157210172)
	1-113, gnl\|Mm7\|chr2 (157210059-157210171)
	1-113, gnl\|monDom2\|scaffold_6 (2183897-2183730)
	1-113, gnl\|oryCun1\|scaffold_213597 (93947-94113)
	1-113, gnl\|panTro1\|chr21 (37787354-37787521)
	1-113, gnl\|rheMac2\|chr10 (27059680-27059513)
	1-113, gnl\|rn3\|chr3 (148075183-148075347)
	1-113, gnl\|tetNig1\|chr6 (4456212-4456045)
	1-113, gnl\|xenTro1\|scaffold_637 (275589-275747)

	242-972, gnl\|bosTau2\|chr13 (49325953-49325229)
	242-972, gnl\|Hg17\|chr20 (35464987-35465731)
	242-972, gnl\|Mm7\|chr2 (157210642-157211322)