Non-Coding RNA Search

Ss1.1-Pig1-63C18.5

Sequence:


               
               GCGGCTCGAGCAGCCTGGGAGACCTCAGCCAAGGCCTTACTCTTGTCCTAGCCTGTTTTC
TCAACTAAAACTGGGGATCAGACTTCCCTTATGGCCTCACTGGTTAAGGCCTTGGTGCTG
TTATAAAACTGGGGACAGGCTGCACTAGTGTGGGGACAAGGAGAAAGCCTGTGGGTAGCC
TTAGGCAAAGGTGGGGAGAAGAGGGGAGTGGTTAACTCATCTCAGTTTATCATACTTTTG
AGGGGAAGTGTTAACCTCCTTTCTCCCTCTCCAAGGTGGATGGCCGCCACCCACAGGGTC
AGTGGCGACAGGACAGCATGCGGTAAGAGTCCTTACATGCCACATTAGGCCCCTCAGCCC
TTTCCCCAGGACCCAGGGTTTGGAGTTTGAAAAAAGACCTTTTTTCAAACTCTCTCTGGT
CTCGAGCCCAGGGGGCAAAACAGACCAGAGAGAGCCACTGCAAGCCACATGCAGTCAGGG
CCATAGGAGTAGGAATCTTCTTCCTGGGAGGACTGGGAAGGTTTTATGAAGGAGGGGATA
TTGGAGCTGGGCTTTGAAGGATGTGCAGGAGTTTGTTAGTCTTGCTCATCTCTGCCCATA
TCCACTGTGCCTAGTTCAGAATCAACTTAGTTAAAGATAGGTACCCTCCCAACCCACAGC
TTCTGTTTTCTGATTCCCAGGACATATGGGCAGGATGCGCTGAGAAAAAAGTTTACACGA
GCCCGAGATGTGGAGTCTTCAGATGATGACAGCTACAACTGGGGCCCGGCCACTGACCTG
TGACCCTTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCAGCCTGGGAGACCTCAGCCAAGGCCTTACTCTTGTCCTAGCCTGTTTTC
TCAACTAAAACTGGGGATCAGACTTCCCTTATGGCCTCACTGGTTAAGGCCTTGGTGCTG
TTATAAAACTGGGGACAGGCTGCACTAGTGTGGGGACAAGGAGAAAGCCTGTGGGTAGCC
TTAGGCAAAGGTGGGGAGAAGAGGGGAGTGGTTAACTCATCTCAGTTTATCATACTTTTG
AGGGGAAGTGTTAACCTCCTTTCTCCCTCTCCAAGGTGGATGGCCGCCACCCACAGGGTC
AGTGGCGACAGGACAGCATGCGGTAAGAGTCCTTACATGCCACATTAGGCCCCTCAGCCC
TTTCCCCAGGACCCAGGGTTTGGAGTTTGAAAAAAGACCTTTTTTCAAACTCTCTCTGGT
CTCGAGCCCAGGGGGCAAAACAGACCAGAGAGAGCCACTGCAAGCCACATGCAGTCAGGG
CCATAGGAGTAGGAATCTTCTTCCTGGGAGGACTGGGAAGGTTTTATGAAGGAGGGGATA
TTGGAGCTGGGCTTTGAAGGATGTGCAGGAGTTTGTTAGTCTTGCTCATCTCTGCCCATA
TCCACTGTGCCTAGTTCAGAATCAACTTAGTTAAAGATAGGTACCCTCCCAACCCACAGC
TTCTGTTTTCTGATTCCCAGGACATATGGGCAGGATGCGCTGAGAAAAAAGTTTACACGA
GCCCGAGATGTGGAGTCTTCAGATGATGACAGCTACAACTGGGGCCCGGCCACTGACCTG
TGACCCTTCCCA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               179-291, - strand, RNAz p=0.999389
               

               
               370-487, - strand, RNAz p=0.827427
               

               
               528-621, - strand, RNAz p=0.865798

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-291, - strand, RNAz p=0.999389
               

               
               370-487, - strand, RNAz p=0.827427
               

               
               528-621, - strand, RNAz p=0.865798

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               476-658, + strand, RNAmicro p=0.995712

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               476-658, + strand, RNAmicro p=0.995712

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               144-786, gnl|bosTau2|chr7 (17631784-17632442)
               

               
               144-786, gnl|Hg17|chr19 (3701005-3701685)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-786, gnl|bosTau2|chr7 (17631784-17632442)
               

               
               144-786, gnl|Hg17|chr19 (3701005-3701685)

	179-291, - strand, RNAz p=0.999389
	370-487, - strand, RNAz p=0.827427
	528-621, - strand, RNAz p=0.865798

	144-786, gnl\|bosTau2\|chr7 (17631784-17632442)
	144-786, gnl\|Hg17\|chr19 (3701005-3701685)