Non-Coding RNA Search

Ss1.1-Pig1-64F01.5

Sequence:


               
               GCAATGTGACCAAGGACTCAGTTATGGTCTCCTGGAGTCCTCCTGTTGCATCTTTTGATT
ACTATCGAGTATCGTATCGGCCAACACAAGTGGGACGCCTGGACAGCTCAGTGGTGCCCA
ACACAGTGACAGAATTCACCATCACCAAGCTGTACCCAGCTACCGAATATGAAATCAGCC
TCAACAGCGTGCGGGGCAGGGAGGAGAGTGAGCGCATCTGCACCCTCGTGCACACAGCCA
TGGACAATCCTGTGGATCTGACCGCTACCAACATCACTCCAACAGAAGCCCTGTTGCATT
GGAGGGCGCCAGTGGGCATAGTGGAGAACTACGTTATTGTTCTCACTCACTTTGCAGTTG
CTGGAGAGACCATCCTGGTTGATGGAGACAGTGAGGAGTTCCAGCTCGTTGACCTGCTTC
CTAGGACCCACTACACCGTCACTATGTATGCTGCCAGTGGGCCTCTCACCAGTGGCACTA
TCAGCACCAACTTCTCTACTCTCCTGGACGCTCCTGCAAATCTGACAGCCAGTGAAGTCA
CCAGACAAAGTGCCCTGATCTCCTGGCAGCCTCCCAGAGCAGAGATTGAGAACTACGTCT
TGACCTACAAATCCACTGATGGAAGTCGCAAGGAGCTGATTGTGGATGCGGAGGACACGT
GGATACGACTGGAGGGCCTGTCTGAGAGTACAGACTACACAGTGCTCCTGCAGGCAGCCC
AGGACACTGAGCGGAGCGGTGTCACCTCCACTGCCTTCAGCACAGGGGGCCGGGTCTTCC
CTCATCCTCAAGACTGTGCCCAGCATTTGATGAACGGAGACACTCTGAGTGGGGTTTACA
CCATCTTCCTTAATGGAGAGCTAAGCCAGAAGTTACAGGTGTATTGCGACATGACCACCG
ATGGGGGTGGCTGGATTGTATTCCAGAGGCGGCAGAATGGCCAAACCGATTTTTTCCGGA
AGTGGGTTGAGTACCGGGCTGGCTTTGGGAACCTGGAGGATGAGTTTTGGTTGGGGCTGG
ACAACATACACAGGATCACGTCTCAGGGCCGCTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAATGTGACCAAGGACTCAGTTATGGTCTCCTGGAGTCCTCCTGTTGCATCTTTTGATT
ACTATCGAGTATCGTATCGGCCAACACAAGTGGGACGCCTGGACAGCTCAGTGGTGCCCA
ACACAGTGACAGAATTCACCATCACCAAGCTGTACCCAGCTACCGAATATGAAATCAGCC
TCAACAGCGTGCGGGGCAGGGAGGAGAGTGAGCGCATCTGCACCCTCGTGCACACAGCCA
TGGACAATCCTGTGGATCTGACCGCTACCAACATCACTCCAACAGAAGCCCTGTTGCATT
GGAGGGCGCCAGTGGGCATAGTGGAGAACTACGTTATTGTTCTCACTCACTTTGCAGTTG
CTGGAGAGACCATCCTGGTTGATGGAGACAGTGAGGAGTTCCAGCTCGTTGACCTGCTTC
CTAGGACCCACTACACCGTCACTATGTATGCTGCCAGTGGGCCTCTCACCAGTGGCACTA
TCAGCACCAACTTCTCTACTCTCCTGGACGCTCCTGCAAATCTGACAGCCAGTGAAGTCA
CCAGACAAAGTGCCCTGATCTCCTGGCAGCCTCCCAGAGCAGAGATTGAGAACTACGTCT
TGACCTACAAATCCACTGATGGAAGTCGCAAGGAGCTGATTGTGGATGCGGAGGACACGT
GGATACGACTGGAGGGCCTGTCTGAGAGTACAGACTACACAGTGCTCCTGCAGGCAGCCC
AGGACACTGAGCGGAGCGGTGTCACCTCCACTGCCTTCAGCACAGGGGGCCGGGTCTTCC
CTCATCCTCAAGACTGTGCCCAGCATTTGATGAACGGAGACACTCTGAGTGGGGTTTACA
CCATCTTCCTTAATGGAGAGCTAAGCCAGAAGTTACAGGTGTATTGCGACATGACCACCG
ATGGGGGTGGCTGGATTGTATTCCAGAGGCGGCAGAATGGCCAAACCGATTTTTTCCGGA
AGTGGGTTGAGTACCGGGCTGGCTTTGGGAACCTGGAGGATGAGTTTTGGTTGGGGCTGG
ACAACATACACAGGATCACGTCTCAGGGCCGCTATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               356-473, - strand, RNAz p=0.650461

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-473, - strand, RNAz p=0.650461

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

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               89-237, gnl|bosTau2|chr16 (42908223-42908075)
               

               
               89-237, gnl|Hg17|chr1 (172063604-172063456)
               

               
               89-237, gnl|Mm7|chr1 (159851365-159851513)
               


               
               356-499, gnl|bosTau2|chr16 (44979453-44979310)
               

               
               356-499, gnl|canFam2|chr7 (27060698-27060585)
               

               
               356-499, gnl|danRer3|chr2 (28358578-28358465)
               

               
               356-499, gnl|dasNov1|scaffold_577 (69659-69773)
               

               
               356-499, gnl|echTel1|scaffold_291942 (74091-74201)
               

               
               356-499, gnl|fr1|chrUn (115924600-115924705)
               

               
               356-499, gnl|hg17|chr1 (172057099-172057212)
               

               
               356-499, gnl|Hg17|chr1 (172057257-172057114)
               

               
               356-499, gnl|loxAfr1|scaffold_3060 (2479-2592)
               

               
               356-499, gnl|mm7|chr1 (159857201-159857089)
               

               
               356-499, gnl|Mm7|chr1 (159857042-159857185)
               

               
               356-499, gnl|monDom2|scaffold_16 (26575735-26575848)
               

               
               356-499, gnl|oryCun1|scaffold_206247 (47747-47860)
               

               
               356-499, gnl|panTro1|chr1 (154456484-154456597)
               

               
               356-499, gnl|rheMac2|chr1 (204956078-204956191)
               

               
               356-499, gnl|rn3|chr13 (75330291-75330178)
               

               
               356-499, gnl|tetNig1|chr15 (5870863-5870758)
               

               
               356-499, gnl|xenTro1|scaffold_126 (2232415-2232307)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-237, gnl|bosTau2|chr16 (42908223-42908075)
               

               
               89-237, gnl|Hg17|chr1 (172063604-172063456)
               

               
               89-237, gnl|Mm7|chr1 (159851365-159851513)
               


               
               356-499, gnl|bosTau2|chr16 (44979453-44979310)
               

               
               356-499, gnl|canFam2|chr7 (27060698-27060585)
               

               
               356-499, gnl|danRer3|chr2 (28358578-28358465)
               

               
               356-499, gnl|dasNov1|scaffold_577 (69659-69773)
               

               
               356-499, gnl|echTel1|scaffold_291942 (74091-74201)
               

               
               356-499, gnl|fr1|chrUn (115924600-115924705)
               

               
               356-499, gnl|hg17|chr1 (172057099-172057212)
               

               
               356-499, gnl|Hg17|chr1 (172057257-172057114)
               

               
               356-499, gnl|loxAfr1|scaffold_3060 (2479-2592)
               

               
               356-499, gnl|mm7|chr1 (159857201-159857089)
               

               
               356-499, gnl|Mm7|chr1 (159857042-159857185)
               

               
               356-499, gnl|monDom2|scaffold_16 (26575735-26575848)
               

               
               356-499, gnl|oryCun1|scaffold_206247 (47747-47860)
               

               
               356-499, gnl|panTro1|chr1 (154456484-154456597)
               

               
               356-499, gnl|rheMac2|chr1 (204956078-204956191)
               

               
               356-499, gnl|rn3|chr13 (75330291-75330178)
               

               
               356-499, gnl|tetNig1|chr15 (5870863-5870758)
               

               
               356-499, gnl|xenTro1|scaffold_126 (2232415-2232307)

	89-237, gnl\|bosTau2\|chr16 (42908223-42908075)
	89-237, gnl\|Hg17\|chr1 (172063604-172063456)
	89-237, gnl\|Mm7\|chr1 (159851365-159851513)

	356-499, gnl\|bosTau2\|chr16 (44979453-44979310)
	356-499, gnl\|canFam2\|chr7 (27060698-27060585)
	356-499, gnl\|danRer3\|chr2 (28358578-28358465)
	356-499, gnl\|dasNov1\|scaffold_577 (69659-69773)
	356-499, gnl\|echTel1\|scaffold_291942 (74091-74201)
	356-499, gnl\|fr1\|chrUn (115924600-115924705)
	356-499, gnl\|hg17\|chr1 (172057099-172057212)
	356-499, gnl\|Hg17\|chr1 (172057257-172057114)
	356-499, gnl\|loxAfr1\|scaffold_3060 (2479-2592)
	356-499, gnl\|mm7\|chr1 (159857201-159857089)
	356-499, gnl\|Mm7\|chr1 (159857042-159857185)
	356-499, gnl\|monDom2\|scaffold_16 (26575735-26575848)
	356-499, gnl\|oryCun1\|scaffold_206247 (47747-47860)
	356-499, gnl\|panTro1\|chr1 (154456484-154456597)
	356-499, gnl\|rheMac2\|chr1 (204956078-204956191)
	356-499, gnl\|rn3\|chr13 (75330291-75330178)
	356-499, gnl\|tetNig1\|chr15 (5870863-5870758)
	356-499, gnl\|xenTro1\|scaffold_126 (2232415-2232307)