Non-Coding RNA Search

Ss1.1-Pig1-64G18.5

Sequence:


               
               AGTGAGGCCAGCATTGCCAGCAACCTACAAGCCATGTCCACCCAGATGTTCCAGACTAAA
CGCTGCTTCCGTCTGGCCCCCACCTTCAGCAACCTGCTCCTCCAGCCCACCACCGAAGCT
CCCAGCTTGGCCAGCCGCAGGCCCTGTGTCAATGGGGATGTGGACAAGCCCTCAGAGCCA
GCCTCTGAAGAGGGCTCTGAGTCGGAGGGAAGTGAATCTAGTGGGCGTTCCTGTCGGAAT
GAGCGCAGCATCCAGGAGAAGCTGCAAGTCCTGATGGCTGAAGGCCTGCTTCCTGCTGTG
AAAGTCTTCCTGGACTGGCTGCGGACCAACCCTGACCTCATCATTGTGTGTGCACAGAGC
TCTCAAAGTCTGTGGAACCGCCTGTCTGTGTTGCTGAATCTGTTGCCAGCTGCTGGCGAA
CTCCAAGAGTCTGGCCTGGCCCTGTGTCCCGAGGTCCAGGATCTTCTTGAAGGTTGTGAA
CTGCCTGACCTCCCTTCTAGCCTGCTGCTCCCAGAAGACATGGCACTTCGCAACCTGCCT
CCCCTCCGGGCTGCCCACAGACACTTTAACTTTGACACGGATCGGCTCCTGCTCAGCGCC
CTAGAGGAGACGGTCGTGCGCATTTGCTGCATCCGCAGCTTTGGCCACTTTGTTGCCAGC
CTACAGGGAAGCATCCTTCAGTTCAACCCAGAGGTTGGCATCTTCGTCAGCATCGCCCAG
TCTGAGCATGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAGGCCAGCATTGCCAGCAACCTACAAGCCATGTCCACCCAGATGTTCCAGACTAAA
CGCTGCTTCCGTCTGGCCCCCACCTTCAGCAACCTGCTCCTCCAGCCCACCACCGAAGCT
CCCAGCTTGGCCAGCCGCAGGCCCTGTGTCAATGGGGATGTGGACAAGCCCTCAGAGCCA
GCCTCTGAAGAGGGCTCTGAGTCGGAGGGAAGTGAATCTAGTGGGCGTTCCTGTCGGAAT
GAGCGCAGCATCCAGGAGAAGCTGCAAGTCCTGATGGCTGAAGGCCTGCTTCCTGCTGTG
AAAGTCTTCCTGGACTGGCTGCGGACCAACCCTGACCTCATCATTGTGTGTGCACAGAGC
TCTCAAAGTCTGTGGAACCGCCTGTCTGTGTTGCTGAATCTGTTGCCAGCTGCTGGCGAA
CTCCAAGAGTCTGGCCTGGCCCTGTGTCCCGAGGTCCAGGATCTTCTTGAAGGTTGTGAA
CTGCCTGACCTCCCTTCTAGCCTGCTGCTCCCAGAAGACATGGCACTTCGCAACCTGCCT
CCCCTCCGGGCTGCCCACAGACACTTTAACTTTGACACGGATCGGCTCCTGCTCAGCGCC
CTAGAGGAGACGGTCGTGCGCATTTGCTGCATCCGCAGCTTTGGCCACTTTGTTGCCAGC
CTACAGGGAAGCATCCTTCAGTTCAACCCAGAGGTTGGCATCTTCGTCAGCATCGCCCAG
TCTGAGCATGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545638|emb|CAH56374.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545638|emb|CAH56374.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               230-347, - strand, RNAz p=0.726179

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-347, - strand, RNAz p=0.726179

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-181, gnl|bosTau2|chr3 (10342645-10342465)
               

               
               1-181, gnl|Hg17|chr1 (153048825-153048645)
               

               
               1-181, gnl|Mm7|chr3 (88465202-88465382)
               


               
               230-650, gnl|bosTau2|chr14 (33069281-33068861)
               

               
               230-650, gnl|Hg17|chr8 (110861161-110862988)
               

               
               230-650, gnl|Mm7|chr15 (44928135-44928550)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-181, gnl|bosTau2|chr3 (10342645-10342465)
               

               
               1-181, gnl|Hg17|chr1 (153048825-153048645)
               

               
               1-181, gnl|Mm7|chr3 (88465202-88465382)
               


               
               230-650, gnl|bosTau2|chr14 (33069281-33068861)
               

               
               230-650, gnl|Hg17|chr8 (110861161-110862988)
               

               
               230-650, gnl|Mm7|chr15 (44928135-44928550)

	1-181, gnl\|bosTau2\|chr3 (10342645-10342465)
	1-181, gnl\|Hg17\|chr1 (153048825-153048645)
	1-181, gnl\|Mm7\|chr3 (88465202-88465382)

	230-650, gnl\|bosTau2\|chr14 (33069281-33068861)
	230-650, gnl\|Hg17\|chr8 (110861161-110862988)
	230-650, gnl\|Mm7\|chr15 (44928135-44928550)