Non-Coding RNA Search

Ss1.1-Pig1-65F03.5

Sequence:


               
               GCGTGCGTCGTTAGCTGCACACTCAGAAGAGAGCTTTGAGAATTTTGCAGACCCCTCTTC
TCCTACTATCTCTGCTTATGAGAATCTGCTCAGAACACCGACGCCTCCAGAAGTAACTGC
AATTCCAGAAGATATTCGCCAGATTCTGTCAAAGTACAACTCAAACCTCGCCACTCCGAC
AGCAGTGAAACCGGTGCCACCTGGCAAAGTGTTCCTTCCCCGACGTGAAGGGCAGAACAC
CCGAGACGCTGGCAACAAAGAAAACCGCCGAGAGTGAGAGCACTTGCAGTGGATCCATCC
TTCCACTGTAGAAACTGAACAGGCGGGACTCTGCGTTCGTCACAGCCCCCAGCGCCTCCC
CCCTTTGTCAGCCCAGCCCGTGTTCAAGACGAGCGTGGACCCTGATGTCACAAAATGCTT
TCTCTTAAGGCCAATGCAGTCCAACCTCTGTCTCACTGACGTGTCGTTCAGCTCACCCCT
TTCGAAAGATGATTTCAGATTTACTCTGCTTGATGGGACAAAGTGGCTTCAGTAGTATTA
GGAAGCAGGAGTAACCATTTCCGAAATTTACATGTTACTGTTTGCTACTCAGATAAGGCC
AGTGGCTGTCCCCTTGGGAAGGGATGGTGTGGCTGGAGCCGGGCTTCGTCCTCGGTCTGC
TCTCCTGTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGCGTCGTTAGCTGCACACTCAGAAGAGAGCTTTGAGAATTTTGCAGACCCCTCTTC
TCCTACTATCTCTGCTTATGAGAATCTGCTCAGAACACCGACGCCTCCAGAAGTAACTGC
AATTCCAGAAGATATTCGCCAGATTCTGTCAAAGTACAACTCAAACCTCGCCACTCCGAC
AGCAGTGAAACCGGTGCCACCTGGCAAAGTGTTCCTTCCCCGACGTGAAGGGCAGAACAC
CCGAGACGCTGGCAACAAAGAAAACCGCCGAGAGTGAGAGCACTTGCAGTGGATCCATCC
TTCCACTGTAGAAACTGAACAGGCGGGACTCTGCGTTCGTCACAGCCCCCAGCGCCTCCC
CCCTTTGTCAGCCCAGCCCGTGTTCAAGACGAGCGTGGACCCTGATGTCACAAAATGCTT
TCTCTTAAGGCCAATGCAGTCCAACCTCTGTCTCACTGACGTGTCGTTCAGCTCACCCCT
TTCGAAAGATGATTTCAGATTTACTCTGCTTGATGGGACAAAGTGGCTTCAGTAGTATTA
GGAAGCAGGAGTAACCATTTCCGAAATTTACATGTTACTGTTTGCTACTCAGATAAGGCC
AGTGGCTGTCCCCTTGGGAAGGGATGGTGTGGCTGGAGCCGGGCTTCGTCCTCGGTCTGC
TCTCCTGTCTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               163-282, - strand, RNAz p=0.790344

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-282, - strand, RNAz p=0.790344

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-655, gnl|bosTau2|chr14 (15888902-15888224)
               

               
               3-655, gnl|Hg17|chr13 (20630200-20626895)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-655, gnl|bosTau2|chr14 (15888902-15888224)
               

               
               3-655, gnl|Hg17|chr13 (20630200-20626895)

	3-655, gnl\|bosTau2\|chr14 (15888902-15888224)
	3-655, gnl\|Hg17\|chr13 (20630200-20626895)