Non-Coding RNA Search

Ss1.1-Pig1-65G10.5

Sequence:


               
               GGTTCTTTTTCCCTAGGGCTACTCACATGCCTAGGTTGAAAGAATCTAAGTCTCTGTCCA
GAATCAAACAGATTTAGCTTTTAGCCCATTAATGGTAGTTTTAAGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCTTTTTCCCTAGGGCTACTCACATGCCTAGGTTGAAAGAATCTAAGTCTCTGTCCA
GAATCAAACAGATTTAGCTTTTAGCCCATTAATGGTAGTTTTAAGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-108, + strand, RNAz p=0.739569

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-108, + strand, RNAz p=0.739569

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-108, gnl|bosTau2|chr19 (16675397-16675502)
               

               
               2-108, gnl|canFam2|chr9 (48509764-48509539)
               

               
               2-108, gnl|dasNov1|scaffold_13941 (45541-45770)
               

               
               2-108, gnl|echTel1|scaffold_285103 (86475-86258)
               

               
               2-108, gnl|hg17|chr17 (393263-393485)
               

               
               2-108, gnl|Hg17|chr17 (393524-393422)
               

               
               2-108, gnl|mm7|chr11 (76153574-76153797)
               

               
               2-108, gnl|monDom2|scaffold_86 (1958289-1958143)
               

               
               2-108, gnl|oryCun1|scaffold_148133 (496-271)
               

               
               2-108, gnl|panTro1|chr19 (495905-496126)
               

               
               2-108, gnl|rheMac2|chr16 (357280-357497)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-108, gnl|bosTau2|chr19 (16675397-16675502)
               

               
               2-108, gnl|canFam2|chr9 (48509764-48509539)
               

               
               2-108, gnl|dasNov1|scaffold_13941 (45541-45770)
               

               
               2-108, gnl|echTel1|scaffold_285103 (86475-86258)
               

               
               2-108, gnl|hg17|chr17 (393263-393485)
               

               
               2-108, gnl|Hg17|chr17 (393524-393422)
               

               
               2-108, gnl|mm7|chr11 (76153574-76153797)
               

               
               2-108, gnl|monDom2|scaffold_86 (1958289-1958143)
               

               
               2-108, gnl|oryCun1|scaffold_148133 (496-271)
               

               
               2-108, gnl|panTro1|chr19 (495905-496126)
               

               
               2-108, gnl|rheMac2|chr16 (357280-357497)

	2-108, gnl\|bosTau2\|chr19 (16675397-16675502)
	2-108, gnl\|canFam2\|chr9 (48509764-48509539)
	2-108, gnl\|dasNov1\|scaffold_13941 (45541-45770)
	2-108, gnl\|echTel1\|scaffold_285103 (86475-86258)
	2-108, gnl\|hg17\|chr17 (393263-393485)
	2-108, gnl\|Hg17\|chr17 (393524-393422)
	2-108, gnl\|mm7\|chr11 (76153574-76153797)
	2-108, gnl\|monDom2\|scaffold_86 (1958289-1958143)
	2-108, gnl\|oryCun1\|scaffold_148133 (496-271)
	2-108, gnl\|panTro1\|chr19 (495905-496126)
	2-108, gnl\|rheMac2\|chr16 (357280-357497)