Non-Coding RNA Search

Ss1.1-Pig1-65O22.5

Sequence:


               
               CCCACGCGTCCGGGGATGGTGTCAGAAGCCTTGTAATAAATGATTCCTGGACCACAGTTC
TTGGAAATTGGCAGTAAAAGGAAGCCATTCATCTCACCCCTTGATCTCTTACTGAAGTAC
CTCCTCAGGTGGAGAAAAAAGCCCCTAGAAATATACATGACCTAAGCCATTGCACCACAG
GGATAAATGTTTCTATTGGAAATGGAATTGCCAAAGCCTCCACCCCAGGAACCTTCATTC
TTATAAGAAAAGGGAAATTATCAACTACACCTTGGTTGTAGGTGCTCAATTCCCAACCTC
TGCAAAGGCGCCCCTGCCAGAGAGAACCTGAACTCAGCATCCTTTGACTCTTTCCTTGGC
AAAAAATGGTCTCACTCATCCTTCTCTCTGCCCCTTAGGTCAAAAATTTCCCCTGCTCTC
TCACTGCTTTTCAAAGACACAGTAGTGTTCCTTTATTCTTTCTGTGATTGACATCTTGTT
TTTGTCACCGAGATAATGTGCTGGCATTTGCTATCTTCACATTGATCCTCTAAAAAGGTG
ACATGCAAACAACGATGCCAGAGAAGGAAGAGAATATCTTTGTGATGCTGTCCAAGTTCT
TGTGAAATGATTAGAACTGAATTATCTTGGTGTTTGCCAGTTGAGGTCAGGCCAACAACT
GTACTTGTCTTCATTTCCCAGAGGGCATGACGAGAAAAGACAGAAGAGTTCAAGGAATTA
AAAACAGAGCTTTCGTTAGGATACTATTTGGGGTCAGGTAAACATCTCTTTTGATTTCAT
TGAAAAATTCCAGAAGGCCAAGGGCAAATCTCCAGGAGACTTGTTTCAAGCAGTGTCGCT
CAGTGGAAAGTTCACCTTCAAAAAAATTTAGGAAACCTGAGTAAGAAACTGCTTAGAGGA
CTCTTAGAAAAACATACAAGGAAAAGGACACCAAGACTGAAATTTCTTCCCATTTGGTAA
ATGCGGAAGGCCTGAGAGTTATTTTTCCCCAGTGACTAAGAAAGAGCTCTTCATTGCACT
TGAGGTGGTTTCTTTCCAGGAGCTATAGAATCACCCCCACCTCCTTTTTCTTTTTTGTCT
TTTTAGGGCCGAACCTCCATATGCCATGGGAGTGGCTCTAGAAAAGGCAAAAAGCCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGCGTCCGGGGATGGTGTCAGAAGCCTTGTAATAAATGATTCCTGGACCACAGTTC
TTGGAAATTGGCAGTAAAAGGAAGCCATTCATCTCACCCCTTGATCTCTTACTGAAGTAC
CTCCTCAGGTGGAGAAAAAAGCCCCTAGAAATATACATGACCTAAGCCATTGCACCACAG
GGATAAATGTTTCTATTGGAAATGGAATTGCCAAAGCCTCCACCCCAGGAACCTTCATTC
TTATAAGAAAAGGGAAATTATCAACTACACCTTGGTTGTAGGTGCTCAATTCCCAACCTC
TGCAAAGGCGCCCCTGCCAGAGAGAACCTGAACTCAGCATCCTTTGACTCTTTCCTTGGC
AAAAAATGGTCTCACTCATCCTTCTCTCTGCCCCTTAGGTCAAAAATTTCCCCTGCTCTC
TCACTGCTTTTCAAAGACACAGTAGTGTTCCTTTATTCTTTCTGTGATTGACATCTTGTT
TTTGTCACCGAGATAATGTGCTGGCATTTGCTATCTTCACATTGATCCTCTAAAAAGGTG
ACATGCAAACAACGATGCCAGAGAAGGAAGAGAATATCTTTGTGATGCTGTCCAAGTTCT
TGTGAAATGATTAGAACTGAATTATCTTGGTGTTTGCCAGTTGAGGTCAGGCCAACAACT
GTACTTGTCTTCATTTCCCAGAGGGCATGACGAGAAAAGACAGAAGAGTTCAAGGAATTA
AAAACAGAGCTTTCGTTAGGATACTATTTGGGGTCAGGTAAACATCTCTTTTGATTTCAT
TGAAAAATTCCAGAAGGCCAAGGGCAAATCTCCAGGAGACTTGTTTCAAGCAGTGTCGCT
CAGTGGAAAGTTCACCTTCAAAAAAATTTAGGAAACCTGAGTAAGAAACTGCTTAGAGGA
CTCTTAGAAAAACATACAAGGAAAAGGACACCAAGACTGAAATTTCTTCCCATTTGGTAA
ATGCGGAAGGCCTGAGAGTTATTTTTCCCCAGTGACTAAGAAAGAGCTCTTCATTGCACT
TGAGGTGGTTTCTTTCCAGGAGCTATAGAATCACCCCCACCTCCTTTTTCTTTTTTGTCT
TTTTAGGGCCGAACCTCCATATGCCATGGGAGTGGCTCTAGAAAAGGCAAAAAGCCCTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               163-253, - strand, RNAz p=0.569909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-253, - strand, RNAz p=0.569909

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               16-1039, gnl|bosTau2|chr10 (3709998-3708980)
               

               
               16-1039, gnl|Hg17|chr5 (77910370-77909262)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-1039, gnl|bosTau2|chr10 (3709998-3708980)
               

               
               16-1039, gnl|Hg17|chr5 (77910370-77909262)

	16-1039, gnl\|bosTau2\|chr10 (3709998-3708980)
	16-1039, gnl\|Hg17\|chr5 (77910370-77909262)