Non-Coding RNA Search

Ss1.1-Pig1-67B16.5

Sequence:


               
               GAAAAGTACAAGTTCATCGTGCTAAACTCTCAGGCCTCCCAAGCAGGGAGCCTAGGCGGG
GAGAGAAGTTCTGGTCAACTTTGCTCCCAAGCTCAGCTCCCCAGTGCAGATGAGGCTTCC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCGAAGAAGGACCCATT
CCTGGCCCCCAGAGCAGGCTCTCTCCCACTGCTGCCACTGGACAGTTCAAATGTGGGGCT
CCAGTCAATACCCCCCTTCTCCTCGCACCCTGGGCTCCAGAGACCACTGGGCCACCCTCT
GGGCGGGCCCGTCCACTACCAGGAAGTGAATTTTTCAGCTGCCACAACTGTGAGGCTGTG
GCTGGGTGCTCATCGGGGCTGGACCCCTTGGCTCCTGGGGATGAGGACAAGCCCTACAAG
TGTCAGCTCTGCCGGTCTGCCTTCCGCTATAAGGGCAACTTGGCCAGTCACCGCACTGTG
CACACAGGGGAAAAGCCCTACCACTGCTCCATCTGCGGAGCCCGCTTCAACCGGCCTGCT
AACCTGAAAACGCACAGCCGCATCCATTCGGGAGAGAAGCCCTATAAGTGTGAGACGTGT
GGCTCGCGCTTTGTCCAGGTGGCGCATCTGCGGGCCCACGTGCTGATCCACACGGGGGAA
AAGCCCTATCCTTGCCCCACCTGCGGGACTCGCTTCCGCCACCTACAGACCCTCAAGAGC
CACGTTCGCATCCACACGGGAGAGAAGCCTTACCACTGCGACCCCTGCAGCCTGCATTTC
CGGCACAAGAGTCAACTCCGGCTGCATCTGCGCCAGAAACACGGAGCTGCTACCAACACC
AAAGTGCATTANCACATTCTGGGGGGGCCTAGCTGAGCGGCCGCTCAGCCCCACTCCCTT
CCCCGGAGATGGGAAAGCTGTGGCTCAGCCTGGTTCTCTGTCAGGCTTGGGCATGGGGGT
GTGCAAGGACCCTGGATGTCAGCGACTGCCACCACCTTCATTTTCTCACTGGGGAGAGCA
GGGTGGCAGGTCCCGGCTAGATCTGCCTCTGTTTTGCTGGTCAAAACCTCTTCCCCACAA
TCAAAATTGCTTCTGAGGAGAGAACAAGCTAGGAGCTGGAGGAGGGGAGCCTTAAGGAAA
TCAGGCCTCCACCTGCAGCCCCCATCTTAGTTTATCTGTAAATATAATTTATTGAGGCCT
TTGGGTGGCACCCGGGGCCTTCATTCTGCTGCATTTCCCAGGTCCCTCTTCCACAAGTGT
GATCAAACGTGACCTGAAACACAGAATGTGAGGTCACAGCTCTGCTGGCAGAGATTAGCA
CTTGGCTGTCTCCTTTGGCTTGAGTATTTTGTATTACCATTGTCCTAACTTTTCTCTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAGTACAAGTTCATCGTGCTAAACTCTCAGGCCTCCCAAGCAGGGAGCCTAGGCGGG
GAGAGAAGTTCTGGTCAACTTTGCTCCCAAGCTCAGCTCCCCAGTGCAGATGAGGCTTCC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCGAAGAAGGACCCATT
CCTGGCCCCCAGAGCAGGCTCTCTCCCACTGCTGCCACTGGACAGTTCAAATGTGGGGCT
CCAGTCAATACCCCCCTTCTCCTCGCACCCTGGGCTCCAGAGACCACTGGGCCACCCTCT
GGGCGGGCCCGTCCACTACCAGGAAGTGAATTTTTCAGCTGCCACAACTGTGAGGCTGTG
GCTGGGTGCTCATCGGGGCTGGACCCCTTGGCTCCTGGGGATGAGGACAAGCCCTACAAG
TGTCAGCTCTGCCGGTCTGCCTTCCGCTATAAGGGCAACTTGGCCAGTCACCGCACTGTG
CACACAGGGGAAAAGCCCTACCACTGCTCCATCTGCGGAGCCCGCTTCAACCGGCCTGCT
AACCTGAAAACGCACAGCCGCATCCATTCGGGAGAGAAGCCCTATAAGTGTGAGACGTGT
GGCTCGCGCTTTGTCCAGGTGGCGCATCTGCGGGCCCACGTGCTGATCCACACGGGGGAA
AAGCCCTATCCTTGCCCCACCTGCGGGACTCGCTTCCGCCACCTACAGACCCTCAAGAGC
CACGTTCGCATCCACACGGGAGAGAAGCCTTACCACTGCGACCCCTGCAGCCTGCATTTC
CGGCACAAGAGTCAACTCCGGCTGCATCTGCGCCAGAAACACGGAGCTGCTACCAACACC
AAAGTGCATTANCACATTCTGGGGGGGCCTAGCTGAGCGGCCGCTCAGCCCCACTCCCTT
CCCCGGAGATGGGAAAGCTGTGGCTCAGCCTGGTTCTCTGTCAGGCTTGGGCATGGGGGT
GTGCAAGGACCCTGGATGTCAGCGACTGCCACCACCTTCATTTTCTCACTGGGGAGAGCA
GGGTGGCAGGTCCCGGCTAGATCTGCCTCTGTTTTGCTGGTCAAAACCTCTTCCCCACAA
TCAAAATTGCTTCTGAGGAGAGAACAAGCTAGGAGCTGGAGGAGGGGAGCCTTAAGGAAA
TCAGGCCTCCACCTGCAGCCCCCATCTTAGTTTATCTGTAAATATAATTTATTGAGGCCT
TTGGGTGGCACCCGGGGCCTTCATTCTGCTGCATTTCCCAGGTCCCTCTTCCACAAGTGT
GATCAAACGTGACCTGAAACACAGAATGTGAGGTCACAGCTCTGCTGGCAGAGATTAGCA
CTTGGCTGTCTCCTTTGGCTTGAGTATTTTGTATTACCATTGTCCTAACTTTTCTCTTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26328463|dbj|BAC27970.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26328463|dbj|BAC27970.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               2-134, - strand, RNAz p=0.998927

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-134, - strand, RNAz p=0.998927

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               2-134, gnl|bosTau2|chr19 (14687010-14687139)
               

               
               2-134, gnl|Hg17|chr17 (6868626-6868773)
               

               
               2-134, gnl|Mm7|chr11 (70309773-70309641)
               


               
               196-323, gnl|bosTau2|chr19 (14687431-14687558)
               

               
               196-323, gnl|Hg17|chr17 (6869117-6869244)
               

               
               196-323, gnl|Mm7|chr11 (70309327-70309200)
               


               
               405-840, gnl|bosTau2|chr14 (25895283-25895718)
               

               
               405-840, gnl|Hg17|chr19 (49431719-49432154)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-134, gnl|bosTau2|chr19 (14687010-14687139)
               

               
               2-134, gnl|Hg17|chr17 (6868626-6868773)
               

               
               2-134, gnl|Mm7|chr11 (70309773-70309641)
               


               
               196-323, gnl|bosTau2|chr19 (14687431-14687558)
               

               
               196-323, gnl|Hg17|chr17 (6869117-6869244)
               

               
               196-323, gnl|Mm7|chr11 (70309327-70309200)
               


               
               405-840, gnl|bosTau2|chr14 (25895283-25895718)
               

               
               405-840, gnl|Hg17|chr19 (49431719-49432154)

	2-134, gnl\|bosTau2\|chr19 (14687010-14687139)
	2-134, gnl\|Hg17\|chr17 (6868626-6868773)
	2-134, gnl\|Mm7\|chr11 (70309773-70309641)

	196-323, gnl\|bosTau2\|chr19 (14687431-14687558)
	196-323, gnl\|Hg17\|chr17 (6869117-6869244)
	196-323, gnl\|Mm7\|chr11 (70309327-70309200)

	405-840, gnl\|bosTau2\|chr14 (25895283-25895718)
	405-840, gnl\|Hg17\|chr19 (49431719-49432154)