Non-Coding RNA Search

Ss1.1-Pig1-67M18.5

Sequence:


               
               TGACCGCAGACTCTGCTCTCACCTTGAAGTCTGTATTCAGGATGGCTTGTTTGGACAGTG
CCAGGTGGGAGTGGGGCAAGCCCGGCCCCTTTTGCAAGTCACTTCCCCAGTTCTTCAACG
TTTACAAGGTGTGCTTCGACAGCTCATGTCGCAAGGATTGTCCTGGCACGATGACCTCAC
CCAGTATGTGATCTCCCAGGAGATGGAGCGCATACCCAGGCTTCGCCCCCCAGAAGCCCC
AGCAAGGGACAGATCTGGCTTGGTGCCCAGGAGACCTGGTCCCGCTGGGGAGCTGCTTTT
ACAGGGCATCCCCACTGGCTCCGCCCCTGCTCCCCAGCATCGGCTTCCTCGACCTCCAGT
AGGTGGGAGCGGAGCTGGGGCCAGCTCCCCCCTGTCCCCTCTGCAAGCTGAGCTGCTGCC
CCCTCTCTTGGAACATCTGCTGCTGCCCCCACAGCCCCCCCACCCCGCCCTGAGTTATGA
ACCTGCCCTGCTGCAGCCCTACCTGTTCCATCAGTTTGGCTCCCGAGATGACTCCCGGGG
CTCAGAGAGCTCACCAGGGATGGTCAGTGTCGGCCCCCTGCCCAAGGCTGAACCCCCTGC
GCTCTTCAGCAGAACTGCCTCCAAGGGCATGTTTGGGGCTCACCCTGGCCACTCCTATGG
GGACCCTCCAGGGCCTCCACCTGCTCAGCTTTTCCAGGAGTCAGGGCTGCTCTATCTGGC
CCAGGAGCTGCAAGTGCCCAGCAGGGCCCAGGCACCAAGGCTGCCAGAGCAAGGGGGCAG
CAGCCGGGCAGAGGACTTGTCAGAGGGCTACGACAAGGAAGGACGAGAGGGTCGCAGGGA
GAAGCCTCCTTCCCCAGCAGAGCAGCCAGACGCAACTCTGCAGAGACTGGCAGCAGTGTT
GGCGGGCTACGGGGTGGAGCTGCGTCAGTTGACGCCTGAGCAGCTCTCCACCCTCTCGAC
CCTGCTGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCGCAGACTCTGCTCTCACCTTGAAGTCTGTATTCAGGATGGCTTGTTTGGACAGTG
CCAGGTGGGAGTGGGGCAAGCCCGGCCCCTTTTGCAAGTCACTTCCCCAGTTCTTCAACG
TTTACAAGGTGTGCTTCGACAGCTCATGTCGCAAGGATTGTCCTGGCACGATGACCTCAC
CCAGTATGTGATCTCCCAGGAGATGGAGCGCATACCCAGGCTTCGCCCCCCAGAAGCCCC
AGCAAGGGACAGATCTGGCTTGGTGCCCAGGAGACCTGGTCCCGCTGGGGAGCTGCTTTT
ACAGGGCATCCCCACTGGCTCCGCCCCTGCTCCCCAGCATCGGCTTCCTCGACCTCCAGT
AGGTGGGAGCGGAGCTGGGGCCAGCTCCCCCCTGTCCCCTCTGCAAGCTGAGCTGCTGCC
CCCTCTCTTGGAACATCTGCTGCTGCCCCCACAGCCCCCCCACCCCGCCCTGAGTTATGA
ACCTGCCCTGCTGCAGCCCTACCTGTTCCATCAGTTTGGCTCCCGAGATGACTCCCGGGG
CTCAGAGAGCTCACCAGGGATGGTCAGTGTCGGCCCCCTGCCCAAGGCTGAACCCCCTGC
GCTCTTCAGCAGAACTGCCTCCAAGGGCATGTTTGGGGCTCACCCTGGCCACTCCTATGG
GGACCCTCCAGGGCCTCCACCTGCTCAGCTTTTCCAGGAGTCAGGGCTGCTCTATCTGGC
CCAGGAGCTGCAAGTGCCCAGCAGGGCCCAGGCACCAAGGCTGCCAGAGCAAGGGGGCAG
CAGCCGGGCAGAGGACTTGTCAGAGGGCTACGACAAGGAAGGACGAGAGGGTCGCAGGGA
GAAGCCTCCTTCCCCAGCAGAGCAGCCAGACGCAACTCTGCAGAGACTGGCAGCAGTGTT
GGCGGGCTACGGGGTGGAGCTGCGTCAGTTGACGCCTGAGCAGCTCTCCACCCTCTCGAC
CCTGCTGCAGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26336036|dbj|BAC31716.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26336036|dbj|BAC31716.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               546-665, - strand, RNAz p=0.949856
               

               
               706-825, - strand, RNAz p=0.926106

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               546-665, - strand, RNAz p=0.949856
               

               
               706-825, - strand, RNAz p=0.926106

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               41-156, gnl|bosTau2|chr2 (65245278-65245163)
               

               
               41-156, gnl|canFam2|chr37 (28851346-28851670)
               

               
               41-156, gnl|dasNov1|scaffold_6587 (14398-14091)
               

               
               41-156, gnl|echTel1|scaffold_225405 (9172-8859)
               

               
               41-156, gnl|hg17|chr2 (219997555-219997877)
               

               
               41-156, gnl|Hg17|chr2 (219997785-219997670)
               

               
               41-156, gnl|loxAfr1|scaffold_145 (140622-140981)
               

               
               41-156, gnl|mm7|chr1 (75488006-75488332)
               

               
               41-156, gnl|Mm7|chr1 (75488249-75488134)
               

               
               41-156, gnl|monDom2|scaffold_39 (1242446-1242108)
               

               
               41-156, gnl|oryCun1|scaffold_108941 (902-1221)
               

               
               41-156, gnl|panTro1|chr13 (110161329-110161651)
               

               
               41-156, gnl|rheMac2|chr12 (83161953-83162275)
               

               
               41-156, gnl|rn3|chr9 (74687614-74687941)
               


               
               506-869, gnl|bosTau2|chr2 (65240950-65240587)
               

               
               506-869, gnl|Hg17|chr2 (219992727-219992364)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-156, gnl|bosTau2|chr2 (65245278-65245163)
               

               
               41-156, gnl|canFam2|chr37 (28851346-28851670)
               

               
               41-156, gnl|dasNov1|scaffold_6587 (14398-14091)
               

               
               41-156, gnl|echTel1|scaffold_225405 (9172-8859)
               

               
               41-156, gnl|hg17|chr2 (219997555-219997877)
               

               
               41-156, gnl|Hg17|chr2 (219997785-219997670)
               

               
               41-156, gnl|loxAfr1|scaffold_145 (140622-140981)
               

               
               41-156, gnl|mm7|chr1 (75488006-75488332)
               

               
               41-156, gnl|Mm7|chr1 (75488249-75488134)
               

               
               41-156, gnl|monDom2|scaffold_39 (1242446-1242108)
               

               
               41-156, gnl|oryCun1|scaffold_108941 (902-1221)
               

               
               41-156, gnl|panTro1|chr13 (110161329-110161651)
               

               
               41-156, gnl|rheMac2|chr12 (83161953-83162275)
               

               
               41-156, gnl|rn3|chr9 (74687614-74687941)
               


               
               506-869, gnl|bosTau2|chr2 (65240950-65240587)
               

               
               506-869, gnl|Hg17|chr2 (219992727-219992364)

	546-665, - strand, RNAz p=0.949856
	706-825, - strand, RNAz p=0.926106

	41-156, gnl\|bosTau2\|chr2 (65245278-65245163)
	41-156, gnl\|canFam2\|chr37 (28851346-28851670)
	41-156, gnl\|dasNov1\|scaffold_6587 (14398-14091)
	41-156, gnl\|echTel1\|scaffold_225405 (9172-8859)
	41-156, gnl\|hg17\|chr2 (219997555-219997877)
	41-156, gnl\|Hg17\|chr2 (219997785-219997670)
	41-156, gnl\|loxAfr1\|scaffold_145 (140622-140981)
	41-156, gnl\|mm7\|chr1 (75488006-75488332)
	41-156, gnl\|Mm7\|chr1 (75488249-75488134)
	41-156, gnl\|monDom2\|scaffold_39 (1242446-1242108)
	41-156, gnl\|oryCun1\|scaffold_108941 (902-1221)
	41-156, gnl\|panTro1\|chr13 (110161329-110161651)
	41-156, gnl\|rheMac2\|chr12 (83161953-83162275)
	41-156, gnl\|rn3\|chr9 (74687614-74687941)

	506-869, gnl\|bosTau2\|chr2 (65240950-65240587)
	506-869, gnl\|Hg17\|chr2 (219992727-219992364)