Non-Coding RNA Search

Ss1.1-Pig1-68P02.5

Sequence:


               
               GTTTTTGAAAGAATGTGTGCTACTCTGATTTCACTGGATCCTAATGGCACCAGAGGGAAA
GGGGAGCAGCACAATTCATCAGGTACTTAATCGAGGGAGGCCAGGAGGGCCATCGAAACC
TTCATATGGGACCTACCAAGAACTGACTCCCTCCCGCTGTGGGGCANTCTGCTGAGGTGT
GCAGGGGACGGTCCCTCAGACCCACATACCCGAAGCGCCTTACTCAGCTCTGCTCCTCTC
TACCTTTGTGTGAACTTGGGCTTTTCAGTGAACTGTGGTTTAGTTATCCTGGGTGGCAAA
TCACCAGTGTCCCAATTGCCCCTAACAGAGTGATCTCCTTTGTCTCTGCCACAAAGGCCC
TCAATGCCCTGGCCCTCTGAATGCCCAGCTAAAAAACTGTGCCTGCCAGGCCGGCATGAC
CAGGGTGAGGTCCANTTCCCACCTCTGAGCTTTTCCCTCCGTCTGTGCTGGTGGCTCCTC
CTCTCTGTGTTCTACTCATGTTCCATGGCCAACTTCAAACTCCTGCCCTTGGCAGCCTTT
CCTCACAGCCACATCCAGCTCTGGTGGGACTGGCTCCATTCTCCGTCCACACTCACATAT
ATGGGTATGGGGAGCTATACTGACAGTTTATATTTCTTGGCGTGTGTGTTATGTCCTTTT
ATGTCTATTTGCTTCAGGTCCCTGTTACACTATACATTCCTTGAGTATAGAAACCATGTA
CCCCCCAGTAGCCCAGGAATTTTATAATTCTAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTGAAAGAATGTGTGCTACTCTGATTTCACTGGATCCTAATGGCACCAGAGGGAAA
GGGGAGCAGCACAATTCATCAGGTACTTAATCGAGGGAGGCCAGGAGGGCCATCGAAACC
TTCATATGGGACCTACCAAGAACTGACTCCCTCCCGCTGTGGGGCANTCTGCTGAGGTGT
GCAGGGGACGGTCCCTCAGACCCACATACCCGAAGCGCCTTACTCAGCTCTGCTCCTCTC
TACCTTTGTGTGAACTTGGGCTTTTCAGTGAACTGTGGTTTAGTTATCCTGGGTGGCAAA
TCACCAGTGTCCCAATTGCCCCTAACAGAGTGATCTCCTTTGTCTCTGCCACAAAGGCCC
TCAATGCCCTGGCCCTCTGAATGCCCAGCTAAAAAACTGTGCCTGCCAGGCCGGCATGAC
CAGGGTGAGGTCCANTTCCCACCTCTGAGCTTTTCCCTCCGTCTGTGCTGGTGGCTCCTC
CTCTCTGTGTTCTACTCATGTTCCATGGCCAACTTCAAACTCCTGCCCTTGGCAGCCTTT
CCTCACAGCCACATCCAGCTCTGGTGGGACTGGCTCCATTCTCCGTCCACACTCACATAT
ATGGGTATGGGGAGCTATACTGACAGTTTATATTTCTTGGCGTGTGTGTTATGTCCTTTT
ATGTCTATTTGCTTCAGGTCCCTGTTACACTATACATTCCTTGAGTATAGAAACCATGTA
CCCCCCAGTAGCCCAGGAATTTTATAATTCTAGCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               259-363, - strand, RNAz p=0.968623

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-363, - strand, RNAz p=0.968623

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               2-756, gnl|bosTau2|chr1 (41675985-41675266)
               

               
               2-756, gnl|canFam2|chr33 (29714857-29715767)
               

               
               2-756, gnl|hg17|chr3 (124825891-124826787)
               

               
               2-756, gnl|Hg17|chr3 (124826204-124827377)
               

               
               2-756, gnl|loxAfr1|scaffold_7338 (20854-20033)
               

               
               2-756, gnl|mm7|chr16 (34666442-34665651)
               

               
               2-756, gnl|Mm7|chr16 (34666164-34665128)
               

               
               2-756, gnl|panTro1|chr2 (126538704-126539600)
               

               
               2-756, gnl|rheMac2|chr2 (43617743-43618642)
               

               
               2-756, gnl|rn3|chr11 (67670589-67671404)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-756, gnl|bosTau2|chr1 (41675985-41675266)
               

               
               2-756, gnl|canFam2|chr33 (29714857-29715767)
               

               
               2-756, gnl|hg17|chr3 (124825891-124826787)
               

               
               2-756, gnl|Hg17|chr3 (124826204-124827377)
               

               
               2-756, gnl|loxAfr1|scaffold_7338 (20854-20033)
               

               
               2-756, gnl|mm7|chr16 (34666442-34665651)
               

               
               2-756, gnl|Mm7|chr16 (34666164-34665128)
               

               
               2-756, gnl|panTro1|chr2 (126538704-126539600)
               

               
               2-756, gnl|rheMac2|chr2 (43617743-43618642)
               

               
               2-756, gnl|rn3|chr11 (67670589-67671404)

	2-756, gnl\|bosTau2\|chr1 (41675985-41675266)
	2-756, gnl\|canFam2\|chr33 (29714857-29715767)
	2-756, gnl\|hg17\|chr3 (124825891-124826787)
	2-756, gnl\|Hg17\|chr3 (124826204-124827377)
	2-756, gnl\|loxAfr1\|scaffold_7338 (20854-20033)
	2-756, gnl\|mm7\|chr16 (34666442-34665651)
	2-756, gnl\|Mm7\|chr16 (34666164-34665128)
	2-756, gnl\|panTro1\|chr2 (126538704-126539600)
	2-756, gnl\|rheMac2\|chr2 (43617743-43618642)
	2-756, gnl\|rn3\|chr11 (67670589-67671404)