Non-Coding RNA Search

Ss1.1-Pig1-69N05.5

Sequence:


               
               GCCCACGCGTCCGGGGGGGGTCGGTGGAGCTGTGCGATGCTGCGGGGAGGCCANATCAGG
AGGTGGCTCAGGAGGCCTGGCAGAACCACAAACGGCGGAACGATTCCGTGATCGTGGACA
CTTTCCATGGCCTCTTCAAGTCCACGCTGGTGTGCCCCGATTGCGGCAGGGGGGCTGTGA
CATTCGACCCCTTCTGCTACCTCAGTGTCCCGCTGCCTGTCAGCCACAAGAGGGTCATGG
AGGTCTTCTTCGTCTCCATGGACCCCCGCCGCAAGCCAGAGCAGCACCGGCTCGTGGTCC
CCAAGAAAGGCAAGATCTCGGATCTGTGTGTGGCTCTGGCCAAACACACTGGCGTCTCGC
CAGAAAGGATGATGGTGGCCGACGTCTTCAGTCACCGCTTCTATAAGATCTACCAGCTGG
AGGAGTCTCTGAGCAGCATCTTGGACAGAGATGACATCTTCATATACGAGGTGTCCGGCA
GGGCTGCCATCGGCGAGAACTCCAGAGAGGACGTTGTGCTTCCCATCTACCTGCGGGAGC
GCACCCCAGCCCGGGACTACAACAACTCCTACTATGGCCTGATGCTCTTTGGGCACCCGC
TCCTGGTGTCGGTACCCCAGAGCTGTACAAATACGATCTCATCGCGGTACATCCTGCTGT
ACCGCCTCTCGCGCTACGTGACCAGACCCAGCTCGGATGACGAGGACGATGGTGATGAGA
AAGACCTGGAGGATAAGGACACCCTCCCTAAGCCTGGACATGTGGCTGGGAGCAGCTCCC
AAGACCCTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGGGGGGGTCGGTGGAGCTGTGCGATGCTGCGGGGAGGCCANATCAGG
AGGTGGCTCAGGAGGCCTGGCAGAACCACAAACGGCGGAACGATTCCGTGATCGTGGACA
CTTTCCATGGCCTCTTCAAGTCCACGCTGGTGTGCCCCGATTGCGGCAGGGGGGCTGTGA
CATTCGACCCCTTCTGCTACCTCAGTGTCCCGCTGCCTGTCAGCCACAAGAGGGTCATGG
AGGTCTTCTTCGTCTCCATGGACCCCCGCCGCAAGCCAGAGCAGCACCGGCTCGTGGTCC
CCAAGAAAGGCAAGATCTCGGATCTGTGTGTGGCTCTGGCCAAACACACTGGCGTCTCGC
CAGAAAGGATGATGGTGGCCGACGTCTTCAGTCACCGCTTCTATAAGATCTACCAGCTGG
AGGAGTCTCTGAGCAGCATCTTGGACAGAGATGACATCTTCATATACGAGGTGTCCGGCA
GGGCTGCCATCGGCGAGAACTCCAGAGAGGACGTTGTGCTTCCCATCTACCTGCGGGAGC
GCACCCCAGCCCGGGACTACAACAACTCCTACTATGGCCTGATGCTCTTTGGGCACCCGC
TCCTGGTGTCGGTACCCCAGAGCTGTACAAATACGATCTCATCGCGGTACATCCTGCTGT
ACCGCCTCTCGCGCTACGTGACCAGACCCAGCTCGGATGACGAGGACGATGGTGATGAGA
AAGACCTGGAGGATAAGGACACCCTCCCTAAGCCTGGACATGTGGCTGGGAGCAGCTCCC
AAGACCCTGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26339726|dbj|BAC33526.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26339726|dbj|BAC33526.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-175, - strand, RNAz p=0.805522

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-175, - strand, RNAz p=0.805522

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               24-792, gnl|bosTau2|chr27 (17721739-17722507)
               

               
               24-792, gnl|Mm7|chrX (19147287-19151248)
               


               
               57-277, gnl|bosTau2|chr22 (37766933-37766713)
               

               
               57-277, gnl|Hg17|chr3 (49313131-49312911)
               

               
               57-277, gnl|Mm7|chr9 (108106166-108106386)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-792, gnl|bosTau2|chr27 (17721739-17722507)
               

               
               24-792, gnl|Mm7|chrX (19147287-19151248)
               


               
               57-277, gnl|bosTau2|chr22 (37766933-37766713)
               

               
               57-277, gnl|Hg17|chr3 (49313131-49312911)
               

               
               57-277, gnl|Mm7|chr9 (108106166-108106386)

	24-792, gnl\|bosTau2\|chr27 (17721739-17722507)
	24-792, gnl\|Mm7\|chrX (19147287-19151248)

	57-277, gnl\|bosTau2\|chr22 (37766933-37766713)
	57-277, gnl\|Hg17\|chr3 (49313131-49312911)
	57-277, gnl\|Mm7\|chr9 (108106166-108106386)