Non-Coding RNA Search

Ss1.1-Pig1-6B01.5

Sequence:


               
               AATCTTATGACAGAAATCACCGCCTTGTTAATCATCAGAGAATCCACACGAAGGAGAGAC
CTTTTAAATGTCAGTGGTGTGGGAAAGATTTCATTGGAAGACACACCCTCTGTGTTCATC
AGAAGAAAACACACCTCAGTGGCCCAGTCTGAATGCAGTGTGGCTGGGCTGTCTTCCCGC
CAGGATTCAAGGGTGAGTTTGCAGGAATTAAAACCAAGGGAGGAGAAGCCCCTTGAAGAC
TGTAAGGAAGCTTGTGATCAGAGGTCTGGGCTCACTGGACTTGAGGACGTCCCCATTGGG
GGAAAGTGCCACAAATGTAGCACGTGTGGGAAAACTTTTAACAAGAGCTCACAACTCATT
AGCCACAAGAGATTTCATACTCGAGAGAGGCCCTTCAAATGCAGAGAGTGTGGGAAGACC
TTCAGGTGGTCTTCAAATCTGGCTCGGCATATGAAAAGCCATGTTAGAGATTAGCTTGGG
GCCAGACAACAGCGGGTGGAGGGTGGGGAGAGTATCCTTGATGGTAGGCAGCTTGGTGCA
CACCTTCACAAAGGACCCAGCCCTTTCTATTTTGGAAGCTAGTGGCAGAGAATACTGAGG
ATTCAAAAACTCGAGGCATTCCCATCCTTCAGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTTATGACAGAAATCACCGCCTTGTTAATCATCAGAGAATCCACACGAAGGAGAGAC
CTTTTAAATGTCAGTGGTGTGGGAAAGATTTCATTGGAAGACACACCCTCTGTGTTCATC
AGAAGAAAACACACCTCAGTGGCCCAGTCTGAATGCAGTGTGGCTGGGCTGTCTTCCCGC
CAGGATTCAAGGGTGAGTTTGCAGGAATTAAAACCAAGGGAGGAGAAGCCCCTTGAAGAC
TGTAAGGAAGCTTGTGATCAGAGGTCTGGGCTCACTGGACTTGAGGACGTCCCCATTGGG
GGAAAGTGCCACAAATGTAGCACGTGTGGGAAAACTTTTAACAAGAGCTCACAACTCATT
AGCCACAAGAGATTTCATACTCGAGAGAGGCCCTTCAAATGCAGAGAGTGTGGGAAGACC
TTCAGGTGGTCTTCAAATCTGGCTCGGCATATGAAAAGCCATGTTAGAGATTAGCTTGGG
GCCAGACAACAGCGGGTGGAGGGTGGGGAGAGTATCCTTGATGGTAGGCAGCTTGGTGCA
CACCTTCACAAAGGACCCAGCCCTTTCTATTTTGGAAGCTAGTGGCAGAGAATACTGAGG
ATTCAAAAACTCGAGGCATTCCCATCCTTCAGCTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.731418
               

               
               240-509, + strand, RNAz p=0.980824

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.731418
               

               
               240-509, + strand, RNAz p=0.980824

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               356-519, - strand, RNAmicro p=0.992847

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               356-519, - strand, RNAmicro p=0.992847

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_181489, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_181489, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-635, gnl|bosTau2|chr22 (12545762-12546402)
               

               
               1-635, gnl|Hg17|chr3 (44463449-44462900)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-635, gnl|bosTau2|chr22 (12545762-12546402)
               

               
               1-635, gnl|Hg17|chr3 (44463449-44462900)

	80-199, - strand, RNAz p=0.731418
	240-509, + strand, RNAz p=0.980824

	1-635, gnl\|bosTau2\|chr22 (12545762-12546402)
	1-635, gnl\|Hg17\|chr3 (44463449-44462900)