Non-Coding RNA Search

Ss1.1-Pig1-70A10.5

Sequence:


               
               GCCACCAAAATCGTGTTCCTGACGGTGGGGCTGCTGCTGAGGCACGTCCAGCGGGAGCCC
ACCCTGCCTCAGTACCGGGTCCTCATCGTGGACGAAGTGCACGAGCGGCACCTGCACAAC
GACTTCCTGCTGGGGGTCCTGCAGCGCCTACTGCCCCGGCGGCCCGACCTCAAGGTCATC
CTCATGTCCGCCACCGTCAACACCTCGCTCTTCTCTGCCTACTTCGGCCAGGCCCCCGTG
GTCCAGGTGCCTGGGAGGCTCTTCCCCATCACGGTCGTGTACCAGCCGCAGGAGGCTGAG
CCGACGGCATCCACGTTGGAGAAGCTGGACCCACGGCCCTTCATCCGGGTGCTGGAGGCC
ATCGACAGCAAGTACCCGCCTGAGGAGCGGGGCGACCTCCTGGTCTTCCTCAGCGGCCTG
GCGGAGATCGGCGCCGTGCTCGAGGCCGCCCAGGCCCACGCCCGCCGCTCCGGGCGCTGG
GTGGTGCTGCCACTGCACAGCACCCTCTCTGTGGCTGCCCAGGACAAGGTGTTCGATGTG
GCCCCCCCTGGAGTCCGGAAATGCATCCTCTCCACCAACATTGCTGAGACCTCGGTCACC
ATTGACGGGATCCGCTTTGTGGTAGATTCTGGGAAGGTGAAGGAGATGAGCTACGACCCC
CAGGCCAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACCAAAATCGTGTTCCTGACGGTGGGGCTGCTGCTGAGGCACGTCCAGCGGGAGCCC
ACCCTGCCTCAGTACCGGGTCCTCATCGTGGACGAAGTGCACGAGCGGCACCTGCACAAC
GACTTCCTGCTGGGGGTCCTGCAGCGCCTACTGCCCCGGCGGCCCGACCTCAAGGTCATC
CTCATGTCCGCCACCGTCAACACCTCGCTCTTCTCTGCCTACTTCGGCCAGGCCCCCGTG
GTCCAGGTGCCTGGGAGGCTCTTCCCCATCACGGTCGTGTACCAGCCGCAGGAGGCTGAG
CCGACGGCATCCACGTTGGAGAAGCTGGACCCACGGCCCTTCATCCGGGTGCTGGAGGCC
ATCGACAGCAAGTACCCGCCTGAGGAGCGGGGCGACCTCCTGGTCTTCCTCAGCGGCCTG
GCGGAGATCGGCGCCGTGCTCGAGGCCGCCCAGGCCCACGCCCGCCGCTCCGGGCGCTGG
GTGGTGCTGCCACTGCACAGCACCCTCTCTGTGGCTGCCCAGGACAAGGTGTTCGATGTG
GCCCCCCCTGGAGTCCGGAAATGCATCCTCTCCACCAACATTGCTGAGACCTCGGTCACC
ATTGACGGGATCCGCTTTGTGGTAGATTCTGGGAAGGTGAAGGAGATGAGCTACGACCCC
CAGGCCAAACTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               74-184, - strand, RNAz p=0.509027
               

               
               80-239, - strand, RNAz p=0.559465

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-184, - strand, RNAz p=0.509027
               

               
               80-239, - strand, RNAz p=0.559465

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-276, gnl|bosTau2|chr18 (47334074-47334349)
               

               
               1-276, gnl|canFam2|chr1 (111516795-111516577)
               

               
               1-276, gnl|danRer3|chr18 (47366121-47365903)
               

               
               1-276, gnl|dasNov1|scaffold_45992 (9429-9221)
               

               
               1-276, gnl|echTel1|scaffold_310812 (3588-3403)
               

               
               1-276, gnl|fr1|chrUn (65965287-65965079)
               

               
               1-276, gnl|hg17|chr19 (52550124-52550342)
               

               
               1-276, gnl|Hg17|chr19 (52550175-52550450)
               

               
               1-276, gnl|loxAfr1|scaffold_34786 (190-398)
               

               
               1-276, gnl|mm7|chr7 (13978948-13978730)
               

               
               1-276, gnl|Mm7|chr7 (13978895-13978620)
               

               
               1-276, gnl|monDom2|scaffold_149 (1297540-1297322)
               

               
               1-276, gnl|oryCun1|scaffold_214785 (10586-10794)
               

               
               1-276, gnl|panTro1|chr20 (49861550-49861768)
               

               
               1-276, gnl|rheMac2|chr2 (88666237-88666030)
               

               
               1-276, gnl|rn3|chr19 (39428592-39428397)
               

               
               1-276, gnl|tetNig1|chr16 (5135377-5135159)
               

               
               1-276, gnl|xenTro1|scaffold_865 (145642-145849)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chr18 (47334074-47334349)
               

               
               1-276, gnl|canFam2|chr1 (111516795-111516577)
               

               
               1-276, gnl|danRer3|chr18 (47366121-47365903)
               

               
               1-276, gnl|dasNov1|scaffold_45992 (9429-9221)
               

               
               1-276, gnl|echTel1|scaffold_310812 (3588-3403)
               

               
               1-276, gnl|fr1|chrUn (65965287-65965079)
               

               
               1-276, gnl|hg17|chr19 (52550124-52550342)
               

               
               1-276, gnl|Hg17|chr19 (52550175-52550450)
               

               
               1-276, gnl|loxAfr1|scaffold_34786 (190-398)
               

               
               1-276, gnl|mm7|chr7 (13978948-13978730)
               

               
               1-276, gnl|Mm7|chr7 (13978895-13978620)
               

               
               1-276, gnl|monDom2|scaffold_149 (1297540-1297322)
               

               
               1-276, gnl|oryCun1|scaffold_214785 (10586-10794)
               

               
               1-276, gnl|panTro1|chr20 (49861550-49861768)
               

               
               1-276, gnl|rheMac2|chr2 (88666237-88666030)
               

               
               1-276, gnl|rn3|chr19 (39428592-39428397)
               

               
               1-276, gnl|tetNig1|chr16 (5135377-5135159)
               

               
               1-276, gnl|xenTro1|scaffold_865 (145642-145849)

	74-184, - strand, RNAz p=0.509027
	80-239, - strand, RNAz p=0.559465

	1-276, gnl\|bosTau2\|chr18 (47334074-47334349)
	1-276, gnl\|canFam2\|chr1 (111516795-111516577)
	1-276, gnl\|danRer3\|chr18 (47366121-47365903)
	1-276, gnl\|dasNov1\|scaffold_45992 (9429-9221)
	1-276, gnl\|echTel1\|scaffold_310812 (3588-3403)
	1-276, gnl\|fr1\|chrUn (65965287-65965079)
	1-276, gnl\|hg17\|chr19 (52550124-52550342)
	1-276, gnl\|Hg17\|chr19 (52550175-52550450)
	1-276, gnl\|loxAfr1\|scaffold_34786 (190-398)
	1-276, gnl\|mm7\|chr7 (13978948-13978730)
	1-276, gnl\|Mm7\|chr7 (13978895-13978620)
	1-276, gnl\|monDom2\|scaffold_149 (1297540-1297322)
	1-276, gnl\|oryCun1\|scaffold_214785 (10586-10794)
	1-276, gnl\|panTro1\|chr20 (49861550-49861768)
	1-276, gnl\|rheMac2\|chr2 (88666237-88666030)
	1-276, gnl\|rn3\|chr19 (39428592-39428397)
	1-276, gnl\|tetNig1\|chr16 (5135377-5135159)
	1-276, gnl\|xenTro1\|scaffold_865 (145642-145849)