Non-Coding RNA Search

Ss1.1-Pig1-70E24.5

Sequence:


               
               GGGCCCCGCGGGGATCCCGGTCCCCAATATGTGCCTGGGACCCCGCCTGCTGGGCCGCGT
AGTACTGTGAGTGGGCTTTTGCCTCCTCATAGGTGGGCAACTCCTCGCCCTTGCTGGACT
GTGGGCACAGGCGGTACAGGCTGTTCTCTGCCAGGTGGGTCTCGGTGCCCTGGTGCTCCT
GGCCCTGGGGCTCCTGTCTTGTGGCCTGCTGTAGCACCTGACTGTCCTCGGGGGCCATGA
TCTCCAGAGGGGCCTGGGGGCTCCCTGTGCCCCCAGCGCCGGCCCCACCCCGCAGGGCCT
GCTGCTGGATGGCCAGCAGCGTGCGGGTCTCAGTCAGGTTGCCATAGCGCAGCTGCTCCT
GGATGAGGCGGTGCAGGACCGTCCCTGAAGAGTCTTCCAGCGTCCTCATGCTTCCTGGGC
TTGCACCCACCTGCCTGGACAAAGGCCAGTGGTACCTGGCCCCAGAGCACCCGGACTCCT
GGGTGACCACAAGAACCCGGTGGCCGCCGCTGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCCGCGGGGATCCCGGTCCCCAATATGTGCCTGGGACCCCGCCTGCTGGGCCGCGT
AGTACTGTGAGTGGGCTTTTGCCTCCTCATAGGTGGGCAACTCCTCGCCCTTGCTGGACT
GTGGGCACAGGCGGTACAGGCTGTTCTCTGCCAGGTGGGTCTCGGTGCCCTGGTGCTCCT
GGCCCTGGGGCTCCTGTCTTGTGGCCTGCTGTAGCACCTGACTGTCCTCGGGGGCCATGA
TCTCCAGAGGGGCCTGGGGGCTCCCTGTGCCCCCAGCGCCGGCCCCACCCCGCAGGGCCT
GCTGCTGGATGGCCAGCAGCGTGCGGGTCTCAGTCAGGTTGCCATAGCGCAGCTGCTCCT
GGATGAGGCGGTGCAGGACCGTCCCTGAAGAGTCTTCCAGCGTCCTCATGCTTCCTGGGC
TTGCACCCACCTGCCTGGACAAAGGCCAGTGGTACCTGGCCCCAGAGCACCCGGACTCCT
GGGTGACCACAAGAACCCGGTGGCCGCCGCTGTCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, + strand, RNAz p=0.651582
               

               
               199-318, - strand, RNAz p=0.941588

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.651582
               

               
               199-318, - strand, RNAz p=0.941588

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK223598, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK223598, -

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-471, gnl|bosTau2|chr1 (88096735-88097205)
               

               
               1-471, gnl|canFam2|chr23 (34215571-34216020)
               

               
               1-471, gnl|danRer3|chr6 (12687293-12687727)
               

               
               1-471, gnl|dasNov1|scaffold_42075 (927-1376)
               

               
               1-471, gnl|echTel1|scaffold_324028 (42237-42680)
               

               
               1-471, gnl|fr1|chrUn (181726109-181725648)
               

               
               1-471, gnl|galGal2|chr1 (177351614-177352093)
               

               
               1-471, gnl|hg17|chr3 (135572502-135572951)
               

               
               1-471, gnl|Hg17|chr3 (135572565-135573035)
               

               
               1-471, gnl|loxAfr1|scaffold_27722 (28508-28951)
               

               
               1-471, gnl|mm7|chr9 (102413071-102412619)
               

               
               1-471, gnl|Mm7|chr9 (102413006-102412532)
               

               
               1-471, gnl|monDom2|scaffold_24 (28078395-28078856)
               

               
               1-471, gnl|oryCun1|scaffold_174396 (93055-93559)
               

               
               1-471, gnl|panTro1|chr2 (137761055-137761504)
               

               
               1-471, gnl|rheMac2|chr2 (153383515-153383066)
               

               
               1-471, gnl|rn3|chr8 (107716617-107716168)
               

               
               1-471, gnl|tetNig1|chr15 (5771675-5771214)
               

               
               1-471, gnl|xenTro1|scaffold_346 (1201645-1202049)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-471, gnl|bosTau2|chr1 (88096735-88097205)
               

               
               1-471, gnl|canFam2|chr23 (34215571-34216020)
               

               
               1-471, gnl|danRer3|chr6 (12687293-12687727)
               

               
               1-471, gnl|dasNov1|scaffold_42075 (927-1376)
               

               
               1-471, gnl|echTel1|scaffold_324028 (42237-42680)
               

               
               1-471, gnl|fr1|chrUn (181726109-181725648)
               

               
               1-471, gnl|galGal2|chr1 (177351614-177352093)
               

               
               1-471, gnl|hg17|chr3 (135572502-135572951)
               

               
               1-471, gnl|Hg17|chr3 (135572565-135573035)
               

               
               1-471, gnl|loxAfr1|scaffold_27722 (28508-28951)
               

               
               1-471, gnl|mm7|chr9 (102413071-102412619)
               

               
               1-471, gnl|Mm7|chr9 (102413006-102412532)
               

               
               1-471, gnl|monDom2|scaffold_24 (28078395-28078856)
               

               
               1-471, gnl|oryCun1|scaffold_174396 (93055-93559)
               

               
               1-471, gnl|panTro1|chr2 (137761055-137761504)
               

               
               1-471, gnl|rheMac2|chr2 (153383515-153383066)
               

               
               1-471, gnl|rn3|chr8 (107716617-107716168)
               

               
               1-471, gnl|tetNig1|chr15 (5771675-5771214)
               

               
               1-471, gnl|xenTro1|scaffold_346 (1201645-1202049)

	1-118, + strand, RNAz p=0.651582
	199-318, - strand, RNAz p=0.941588

	1-471, gnl\|bosTau2\|chr1 (88096735-88097205)
	1-471, gnl\|canFam2\|chr23 (34215571-34216020)
	1-471, gnl\|danRer3\|chr6 (12687293-12687727)
	1-471, gnl\|dasNov1\|scaffold_42075 (927-1376)
	1-471, gnl\|echTel1\|scaffold_324028 (42237-42680)
	1-471, gnl\|fr1\|chrUn (181726109-181725648)
	1-471, gnl\|galGal2\|chr1 (177351614-177352093)
	1-471, gnl\|hg17\|chr3 (135572502-135572951)
	1-471, gnl\|Hg17\|chr3 (135572565-135573035)
	1-471, gnl\|loxAfr1\|scaffold_27722 (28508-28951)
	1-471, gnl\|mm7\|chr9 (102413071-102412619)
	1-471, gnl\|Mm7\|chr9 (102413006-102412532)
	1-471, gnl\|monDom2\|scaffold_24 (28078395-28078856)
	1-471, gnl\|oryCun1\|scaffold_174396 (93055-93559)
	1-471, gnl\|panTro1\|chr2 (137761055-137761504)
	1-471, gnl\|rheMac2\|chr2 (153383515-153383066)
	1-471, gnl\|rn3\|chr8 (107716617-107716168)
	1-471, gnl\|tetNig1\|chr15 (5771675-5771214)
	1-471, gnl\|xenTro1\|scaffold_346 (1201645-1202049)