Ss1.1-Pig1-70M10.5
|
TTCGGTTGGTGTGTGTCGAAGAAACCTGACTACGACCTGAGGAGACCAGCGAAGAGGGAC
CACCGAGCCTCGCGAAAGGTCCGCTGAGCGGGCTCGCGTCCGGAGCCACTCCGGGCTGCT
GAGCACCCAGCGGAGCCCACGCCTGGCGCAGGTGTGGGACCCCGTCCTTCCTGTCTTCGC
AGAGGAGTCCTCGCGTGATATTACAACCGTCAGACCTGGGCCTCAGTAAAGCCCACCCCA
GTGACTGTGATTGACATAAACAAAAAGCTTCTGAAAACCAAAAGGCGAAAGGGCGGAAGA
GGAGGCCAGGAGCCAGGCCTCCATCCCCACAGGAGTGAAGCTACACCTGGGAGGTCTCCT
CCCACCCCATCTCTCACCCTGGGGCCCGACTGCCCACCACCTCCTCCTCCTCCTCCCCCC
AACGACCCATCCTCCTCCAACTCCTCCTCCCCTTGCGGAGGCCAGAGGGGCCAGTACAAC
CCCAATCTGGCAGAGCGAAGGCGGGACGATCTCTCCGAAGAGATCAACAACCTCAGAGAG
AAGGTCATGAAGCAGTCCGAGGAGAACAACAACCTGCAGAACCAGGTGCAGAAACTCACA
GAGGAGAACACCTCCCTCCGTGAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCGGTTGGTGTGTGTCGAAGAAACCTGACTACGACCTGAGGAGACCAGCGAAGAGGGAC
CACCGAGCCTCGCGAAAGGTCCGCTGAGCGGGCTCGCGTCCGGAGCCACTCCGGGCTGCT
GAGCACCCAGCGGAGCCCACGCCTGGCGCAGGTGTGGGACCCCGTCCTTCCTGTCTTCGC
AGAGGAGTCCTCGCGTGATATTACAACCGTCAGACCTGGGCCTCAGTAAAGCCCACCCCA
GTGACTGTGATTGACATAAACAAAAAGCTTCTGAAAACCAAAAGGCGAAAGGGCGGAAGA
GGAGGCCAGGAGCCAGGCCTCCATCCCCACAGGAGTGAAGCTACACCTGGGAGGTCTCCT
CCCACCCCATCTCTCACCCTGGGGCCCGACTGCCCACCACCTCCTCCTCCTCCTCCCCCC
AACGACCCATCCTCCTCCAACTCCTCCTCCCCTTGCGGAGGCCAGAGGGGCCAGTACAAC
CCCAATCTGGCAGAGCGAAGGCGGGACGATCTCTCCGAAGAGATCAACAACCTCAGAGAG
AAGGTCATGAAGCAGTCCGAGGAGAACAACAACCTGCAGAACCAGGTGCAGAAACTCACA
GAGGAGAACACCTCCCTCCGTGAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
69-163, + strand, RNAmicro p=0.999762 |
|
61-190, - strand, RNAmicro p=0.973559 |
|
295-426, - strand, RNAmicro p=0.953468 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
69-163, + strand, RNAmicro p=0.999762 |
|
61-190, - strand, RNAmicro p=0.973559 |
|
295-426, - strand, RNAmicro p=0.953468 |
|
295-356, BP315311 Sugano cDNA library, mammary gland OCUB-F Homo sapiens
(dbj|BP315311.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, BP321258 Sugano cDNA library, placenta Homo sapiens cDNA clone
(dbj|BP321258.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, DA501267 FCBBF3 Homo sapiens cDNA clone FCBBF3015450 5', mRNA
(dbj|DA501267.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, DA798876 OCBBF3 Homo sapiens cDNA clone OCBBF3002382 5', mRNA
(dbj|DA798876.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, DB065094 TESTI4 Homo sapiens cDNA clone TESTI4006069 5', mRNA
(dbj|DB065094.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, NISC_kk10a07.y1 NCI_CGAP_Brn72 Macaca mulatta cDNA clone
(gb|BQ807773.1|), blast E-value=0.000000000000001, identity=93.55% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
295-356, BP315311 Sugano cDNA library, mammary gland OCUB-F Homo sapiens
(dbj|BP315311.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, BP321258 Sugano cDNA library, placenta Homo sapiens cDNA clone
(dbj|BP321258.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, DA501267 FCBBF3 Homo sapiens cDNA clone FCBBF3015450 5', mRNA
(dbj|DA501267.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, DA798876 OCBBF3 Homo sapiens cDNA clone OCBBF3002382 5', mRNA
(dbj|DA798876.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, DB065094 TESTI4 Homo sapiens cDNA clone TESTI4006069 5', mRNA
(dbj|DB065094.1|), blast E-value=0.000000000000001, identity=93.55% |
|
295-356, NISC_kk10a07.y1 NCI_CGAP_Brn72 Macaca mulatta cDNA clone
(gb|BQ807773.1|), blast E-value=0.000000000000001, identity=93.55% |
|
1-197, gnl|bosTau2|chr4 (2035555-2035751) |
|
1-197, gnl|canFam2|chr14 (23068277-23069182) |
|
1-197, gnl|dasNov1|scaffold_27651 (10587-11479) |
|
1-197, gnl|hg17|chr7 (93929932-93930833) |
|
1-197, gnl|Hg17|chr7 (93930347-93930543) |
|
1-197, gnl|mm7|chr6 (4699845-4700786) |
|
1-197, gnl|Mm7|chr6 (4700268-4700464) |
|
1-197, gnl|oryCun1|scaffold_214374 (15196-14352) |
|
1-197, gnl|panTro1|chr6 (95530577-95531481) |
|
1-197, gnl|rheMac2|chr3 (122606027-122605126) |
| |
|
254-624, gnl|bosTau2|chr4 (2041827-2042197) |
|
254-624, gnl|canFam2|chr14 (23074557-23075314) |
|
254-624, gnl|dasNov1|scaffold_140870 (54-645) |
|
254-624, gnl|echTel1|scaffold_243081 (3118-3777) |
|
254-624, gnl|hg17|chr7 (93937107-93937710) |
|
254-624, gnl|Hg17|chr7 (93937293-93937657) |
|
254-624, gnl|mm7|chr6 (4706849-4707462) |
|
254-624, gnl|Mm7|chr6 (4707006-4707352) |
|
254-624, gnl|oryCun1|scaffold_214374 (8724-8111) |
|
254-624, gnl|panTro1|chr6 (95537715-95538316) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-197, gnl|bosTau2|chr4 (2035555-2035751) |
|
1-197, gnl|canFam2|chr14 (23068277-23069182) |
|
1-197, gnl|dasNov1|scaffold_27651 (10587-11479) |
|
1-197, gnl|hg17|chr7 (93929932-93930833) |
|
1-197, gnl|Hg17|chr7 (93930347-93930543) |
|
1-197, gnl|mm7|chr6 (4699845-4700786) |
|
1-197, gnl|Mm7|chr6 (4700268-4700464) |
|
1-197, gnl|oryCun1|scaffold_214374 (15196-14352) |
|
1-197, gnl|panTro1|chr6 (95530577-95531481) |
|
1-197, gnl|rheMac2|chr3 (122606027-122605126) |
| |
|
254-624, gnl|bosTau2|chr4 (2041827-2042197) |
|
254-624, gnl|canFam2|chr14 (23074557-23075314) |
|
254-624, gnl|dasNov1|scaffold_140870 (54-645) |
|
254-624, gnl|echTel1|scaffold_243081 (3118-3777) |
|
254-624, gnl|hg17|chr7 (93937107-93937710) |
|
254-624, gnl|Hg17|chr7 (93937293-93937657) |
|
254-624, gnl|mm7|chr6 (4706849-4707462) |
|
254-624, gnl|Mm7|chr6 (4707006-4707352) |
|
254-624, gnl|oryCun1|scaffold_214374 (8724-8111) |
|
254-624, gnl|panTro1|chr6 (95537715-95538316) |
