Non-Coding RNA Search

Ss1.1-Pig1-70P16.5

Sequence:


               
               AGAAGTCGGCCTCCCGGGCCAGGACTGTGTCCAGGCAGTCAGGCCGCTCTCGACAATACT
CCTTGGCCAGGTCGAAGCGGTTCATGTCCAGGTAGGTGCGCCAGACATCCCGGGCCTCCC
TCTGTACGTGGTAGCGGAAGACAGCCCGCTCGGTGTGGGCCCACAGGTGGCCCGTGGAGG
AGTCCTTCACCATGTGCCTCAGTGGCCCAAACTTCTCCAGGAAATGGTCCCGCAGCACCA
CCTGGCCCGTCAGCGTGCACACCGCCTCCACGCGGTCTGCCAGCAGCAGGAGGAAGTGGA
ACTGGGTCAGGACGATGGCCAGGGGTGGGCTGCCGCCAGGACCCACCCCCTCTGGGTACT
CCCAGACCCGTTCCTCGCTCAGCAGGGAGTCAGGCCGCCCGCAGTCCAACGATCCATACA
ACACGCCATCCCCCATCATCCAGGCGAAGGCCCGGGGCGCCGAGCGTAACTTGGGGGTGT
AGAAGGCCAACTCGCTGTAGCCCAGACTGCTGGGGAACTCACGGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTCGGCCTCCCGGGCCAGGACTGTGTCCAGGCAGTCAGGCCGCTCTCGACAATACT
CCTTGGCCAGGTCGAAGCGGTTCATGTCCAGGTAGGTGCGCCAGACATCCCGGGCCTCCC
TCTGTACGTGGTAGCGGAAGACAGCCCGCTCGGTGTGGGCCCACAGGTGGCCCGTGGAGG
AGTCCTTCACCATGTGCCTCAGTGGCCCAAACTTCTCCAGGAAATGGTCCCGCAGCACCA
CCTGGCCCGTCAGCGTGCACACCGCCTCCACGCGGTCTGCCAGCAGCAGGAGGAAGTGGA
ACTGGGTCAGGACGATGGCCAGGGGTGGGCTGCCGCCAGGACCCACCCCCTCTGGGTACT
CCCAGACCCGTTCCTCGCTCAGCAGGGAGTCAGGCCGCCCGCAGTCCAACGATCCATACA
ACACGCCATCCCCCATCATCCAGGCGAAGGCCCGGGGCGCCGAGCGTAACTTGGGGGTGT
AGAAGGCCAACTCGCTGTAGCCCAGACTGCTGGGGAACTCACGGAATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               321-440, - strand, RNAz p=0.847394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-440, - strand, RNAz p=0.847394

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-527, gnl|bosTau2|chr10 (25716042-25715516)
               

               
               1-527, gnl|canFam2|chr30 (11021346-11022140)
               

               
               1-527, gnl|danRer3|chr20 (38429505-38430299)
               

               
               1-527, gnl|dasNov1|scaffold_23107 (12595-13488)
               

               
               1-527, gnl|echTel1|scaffold_294180 (4-808)
               

               
               1-527, gnl|fr1|chrUn (156716469-156715520)
               

               
               1-527, gnl|galGal2|chr5 (21566906-21567700)
               

               
               1-527, gnl|hg17|chr15 (38978676-38979470)
               

               
               1-527, gnl|Hg17|chr15 (38979605-38979079)
               

               
               1-527, gnl|loxAfr1|scaffold_2794 (82640-83404)
               

               
               1-527, gnl|mm7|chr2 (119033810-119034604)
               

               
               1-527, gnl|Mm7|chr2 (119034739-119034213)
               

               
               1-527, gnl|monDom2|scaffold_12 (1241698-1240904)
               

               
               1-527, gnl|oryCun1|scaffold_210939 (28797-29591)
               

               
               1-527, gnl|panTro1|chr16_random (10175366-10176160)
               

               
               1-527, gnl|rheMac2|chr7 (19290366-19291160)
               

               
               1-527, gnl|rn3|chr3 (105707565-105708359)
               

               
               1-527, gnl|tetNig1|chr14 (6666842-6667813)
               

               
               1-527, gnl|xenTro1|scaffold_852 (213937-214719)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-527, gnl|bosTau2|chr10 (25716042-25715516)
               

               
               1-527, gnl|canFam2|chr30 (11021346-11022140)
               

               
               1-527, gnl|danRer3|chr20 (38429505-38430299)
               

               
               1-527, gnl|dasNov1|scaffold_23107 (12595-13488)
               

               
               1-527, gnl|echTel1|scaffold_294180 (4-808)
               

               
               1-527, gnl|fr1|chrUn (156716469-156715520)
               

               
               1-527, gnl|galGal2|chr5 (21566906-21567700)
               

               
               1-527, gnl|hg17|chr15 (38978676-38979470)
               

               
               1-527, gnl|Hg17|chr15 (38979605-38979079)
               

               
               1-527, gnl|loxAfr1|scaffold_2794 (82640-83404)
               

               
               1-527, gnl|mm7|chr2 (119033810-119034604)
               

               
               1-527, gnl|Mm7|chr2 (119034739-119034213)
               

               
               1-527, gnl|monDom2|scaffold_12 (1241698-1240904)
               

               
               1-527, gnl|oryCun1|scaffold_210939 (28797-29591)
               

               
               1-527, gnl|panTro1|chr16_random (10175366-10176160)
               

               
               1-527, gnl|rheMac2|chr7 (19290366-19291160)
               

               
               1-527, gnl|rn3|chr3 (105707565-105708359)
               

               
               1-527, gnl|tetNig1|chr14 (6666842-6667813)
               

               
               1-527, gnl|xenTro1|scaffold_852 (213937-214719)

	1-527, gnl\|bosTau2\|chr10 (25716042-25715516)
	1-527, gnl\|canFam2\|chr30 (11021346-11022140)
	1-527, gnl\|danRer3\|chr20 (38429505-38430299)
	1-527, gnl\|dasNov1\|scaffold_23107 (12595-13488)
	1-527, gnl\|echTel1\|scaffold_294180 (4-808)
	1-527, gnl\|fr1\|chrUn (156716469-156715520)
	1-527, gnl\|galGal2\|chr5 (21566906-21567700)
	1-527, gnl\|hg17\|chr15 (38978676-38979470)
	1-527, gnl\|Hg17\|chr15 (38979605-38979079)
	1-527, gnl\|loxAfr1\|scaffold_2794 (82640-83404)
	1-527, gnl\|mm7\|chr2 (119033810-119034604)
	1-527, gnl\|Mm7\|chr2 (119034739-119034213)
	1-527, gnl\|monDom2\|scaffold_12 (1241698-1240904)
	1-527, gnl\|oryCun1\|scaffold_210939 (28797-29591)
	1-527, gnl\|panTro1\|chr16_random (10175366-10176160)
	1-527, gnl\|rheMac2\|chr7 (19290366-19291160)
	1-527, gnl\|rn3\|chr3 (105707565-105708359)
	1-527, gnl\|tetNig1\|chr14 (6666842-6667813)
	1-527, gnl\|xenTro1\|scaffold_852 (213937-214719)