Non-Coding RNA Search

Ss1.1-Pig1-71A22.5

Sequence:


               
               GAAAACAGAAAAAACAAAAAAAGAAGAAAAAAACAAGAAATAGAAAAAAATATCGTGGGA
TTCCTATGGGGTTGGGGCGGGTGGGGAGAAAGAGATATTTAAAGAAAAATTAGTAACGCA
GTGATTGCACAGGCGAGGCGGCGACGTTCAGAACGTGGATAGAAGCCGGGAGGGCCTGGG
GTGCCAGCCACCGCCCTTCCGGGGCCCGAGGCAGGGTCGGCCCTGCCCCCTCTGCTGGGC
GCAGACTCCACACCTGTCCTCGCTCAAAAGGAAGGATGGCCCCTGGTCCCCCTAGGAACT
TACCAGAAGCTGCAGGGACCAGACGCAGAGCTGAGATGGGGGGTGGGGGCACGGCACATG
GGAGGGTCCGCAGGGATCCGACCGCGGCCAGGACCCATCATGGGTGACTTTCTCCAGGGG
GGCTGCTAAGTCAGGATAGTTGGGTTCCTCACCCTCCTCCATTCCTTTGCCAGCTATCTG
GTCTCCCCACTGCCACCCCATGGGGGCATTTCCCTCCCCGTCGCCCCAAAGATCATGACA
CCCCCAAGCTTCCTTGGCCACGAGGGCCATGCAGGTGGCAGGCAGGCAGGCAGGAGCTGT
GGCCTCTGGGGGAGTCTTGGGTGGTGGTCACAGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAACAGAAAAAACAAAAAAAGAAGAAAAAAACAAGAAATAGAAAAAAATATCGTGGGA
TTCCTATGGGGTTGGGGCGGGTGGGGAGAAAGAGATATTTAAAGAAAAATTAGTAACGCA
GTGATTGCACAGGCGAGGCGGCGACGTTCAGAACGTGGATAGAAGCCGGGAGGGCCTGGG
GTGCCAGCCACCGCCCTTCCGGGGCCCGAGGCAGGGTCGGCCCTGCCCCCTCTGCTGGGC
GCAGACTCCACACCTGTCCTCGCTCAAAAGGAAGGATGGCCCCTGGTCCCCCTAGGAACT
TACCAGAAGCTGCAGGGACCAGACGCAGAGCTGAGATGGGGGGTGGGGGCACGGCACATG
GGAGGGTCCGCAGGGATCCGACCGCGGCCAGGACCCATCATGGGTGACTTTCTCCAGGGG
GGCTGCTAAGTCAGGATAGTTGGGTTCCTCACCCTCCTCCATTCCTTTGCCAGCTATCTG
GTCTCCCCACTGCCACCCCATGGGGGCATTTCCCTCCCCGTCGCCCCAAAGATCATGACA
CCCCCAAGCTTCCTTGGCCACGAGGGCCATGCAGGTGGCAGGCAGGCAGGCAGGAGCTGT
GGCCTCTGGGGGAGTCTTGGGTGGTGGTCACAGCGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-458, - strand, RNAz p=0.997046

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-458, - strand, RNAz p=0.997046

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-458, gnl|bosTau2|chr5 (69203653-69204106)
               

               
               2-458, gnl|Hg17|chr22 (37584763-37584382)
               

               
               2-458, gnl|Mm7|chr15 (79910272-79909811)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-458, gnl|bosTau2|chr5 (69203653-69204106)
               

               
               2-458, gnl|Hg17|chr22 (37584763-37584382)
               

               
               2-458, gnl|Mm7|chr15 (79910272-79909811)

	2-458, gnl\|bosTau2\|chr5 (69203653-69204106)
	2-458, gnl\|Hg17\|chr22 (37584763-37584382)
	2-458, gnl\|Mm7\|chr15 (79910272-79909811)