Non-Coding RNA Search

Ss1.1-Pig1-71D20.5

Sequence:


               
               GGTGATGGTGTCCAAGGCCCGCGGCAAGGACCGACTGTGGAGCCACACGCGGGAGCCGCT
CAAGCAGGCGCTGCTCAAGAAGATCCTGGGCAGCGAGGAGCTCTCGCAGGAGGCCTGCCT
GGCCTTCATCGCTGTGCTCAAGTACATGGGCGACTACCCTTCCAAGAGGATGCGCTCGGT
CAACGAGCTCACCGACCAGATCTTCGAGGGGGCCCTGAAGGCCGAGCCACTCAAGGATGA
GGTGTACGTGCAGATCGTGAAGCAGCTGACCGACAACCACATCAGGTACAGTGAGGAGCG
GGGCTGGGAGCTGCTCTGGCTGTGCACGGGGCTCTTCCCGCCCAGCAACATCCTCCTGCC
CCACGTGCAGCGCTTCCTGCAGTCCCGCAAGCACTGCCCACTCGCCATCGACTGCCTGCA
GCGGCTCCAGAAAGCCCTGAGAAATGGGTCCCGGAAGTACCCCCCACACCTGGTGGAGGT
GGAGGCCATCCAGCACAAAACCACCCAGATTTTCCACAAGGTCTACTTCCCTGATGATAC
TGACGAGGCCTTCGAGGTGGAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGATGGTGTCCAAGGCCCGCGGCAAGGACCGACTGTGGAGCCACACGCGGGAGCCGCT
CAAGCAGGCGCTGCTCAAGAAGATCCTGGGCAGCGAGGAGCTCTCGCAGGAGGCCTGCCT
GGCCTTCATCGCTGTGCTCAAGTACATGGGCGACTACCCTTCCAAGAGGATGCGCTCGGT
CAACGAGCTCACCGACCAGATCTTCGAGGGGGCCCTGAAGGCCGAGCCACTCAAGGATGA
GGTGTACGTGCAGATCGTGAAGCAGCTGACCGACAACCACATCAGGTACAGTGAGGAGCG
GGGCTGGGAGCTGCTCTGGCTGTGCACGGGGCTCTTCCCGCCCAGCAACATCCTCCTGCC
CCACGTGCAGCGCTTCCTGCAGTCCCGCAAGCACTGCCCACTCGCCATCGACTGCCTGCA
GCGGCTCCAGAAAGCCCTGAGAAATGGGTCCCGGAAGTACCCCCCACACCTGGTGGAGGT
GGAGGCCATCCAGCACAAAACCACCCAGATTTTCCACAAGGTCTACTTCCCTGATGATAC
TGACGAGGCCTTCGAGGTGGAGTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               2-150, - strand, RNAz p=0.584782
               

               
               26-140, + strand, RNAz p=0.519095

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-150, - strand, RNAz p=0.584782
               

               
               26-140, + strand, RNAz p=0.519095

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               3-145, - strand, RNAmicro p=0.939771

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               3-145, - strand, RNAmicro p=0.939771

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               2-150, gnl|bosTau2|chr15 (35658664-35658812)
               

               
               2-150, gnl|canFam2|chr21 (24556122-24555914)
               

               
               2-150, gnl|danRer3|chr21 (14986751-14986916)
               

               
               2-150, gnl|echTel1|scaffold_5587 (1459-1255)
               

               
               2-150, gnl|fr1|chrUn (102842671-102842856)
               

               
               2-150, gnl|galGal2|chr1_random (111811-111622)
               

               
               2-150, gnl|hg17|chr11 (76591728-76591935)
               

               
               2-150, gnl|Hg17|chr11 (76591781-76591929)
               

               
               2-150, gnl|loxAfr1|scaffold_200877 (329-541)
               

               
               2-150, gnl|mm7|chr7 (94095673-94095460)
               

               
               2-150, gnl|Mm7|chr7 (94095619-94095471)
               

               
               2-150, gnl|monDom2|scaffold_46 (13130467-13130292)
               

               
               2-150, gnl|rheMac2|chr13 (134090852-134091051)
               

               
               2-150, gnl|rn3|chr1 (155382494-155382281)
               

               
               2-150, gnl|tetNig1|chrUn_random (29648231-29648408)
               

               
               2-150, gnl|xenTro1|scaffold_262 (1044945-1044753)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-150, gnl|bosTau2|chr15 (35658664-35658812)
               

               
               2-150, gnl|canFam2|chr21 (24556122-24555914)
               

               
               2-150, gnl|danRer3|chr21 (14986751-14986916)
               

               
               2-150, gnl|echTel1|scaffold_5587 (1459-1255)
               

               
               2-150, gnl|fr1|chrUn (102842671-102842856)
               

               
               2-150, gnl|galGal2|chr1_random (111811-111622)
               

               
               2-150, gnl|hg17|chr11 (76591728-76591935)
               

               
               2-150, gnl|Hg17|chr11 (76591781-76591929)
               

               
               2-150, gnl|loxAfr1|scaffold_200877 (329-541)
               

               
               2-150, gnl|mm7|chr7 (94095673-94095460)
               

               
               2-150, gnl|Mm7|chr7 (94095619-94095471)
               

               
               2-150, gnl|monDom2|scaffold_46 (13130467-13130292)
               

               
               2-150, gnl|rheMac2|chr13 (134090852-134091051)
               

               
               2-150, gnl|rn3|chr1 (155382494-155382281)
               

               
               2-150, gnl|tetNig1|chrUn_random (29648231-29648408)
               

               
               2-150, gnl|xenTro1|scaffold_262 (1044945-1044753)

	2-150, - strand, RNAz p=0.584782
	26-140, + strand, RNAz p=0.519095

	2-150, gnl\|bosTau2\|chr15 (35658664-35658812)
	2-150, gnl\|canFam2\|chr21 (24556122-24555914)
	2-150, gnl\|danRer3\|chr21 (14986751-14986916)
	2-150, gnl\|echTel1\|scaffold_5587 (1459-1255)
	2-150, gnl\|fr1\|chrUn (102842671-102842856)
	2-150, gnl\|galGal2\|chr1_random (111811-111622)
	2-150, gnl\|hg17\|chr11 (76591728-76591935)
	2-150, gnl\|Hg17\|chr11 (76591781-76591929)
	2-150, gnl\|loxAfr1\|scaffold_200877 (329-541)
	2-150, gnl\|mm7\|chr7 (94095673-94095460)
	2-150, gnl\|Mm7\|chr7 (94095619-94095471)
	2-150, gnl\|monDom2\|scaffold_46 (13130467-13130292)
	2-150, gnl\|rheMac2\|chr13 (134090852-134091051)
	2-150, gnl\|rn3\|chr1 (155382494-155382281)
	2-150, gnl\|tetNig1\|chrUn_random (29648231-29648408)
	2-150, gnl\|xenTro1\|scaffold_262 (1044945-1044753)