Non-Coding RNA Search

Ss1.1-Pig1-73C20.5

Sequence:


               
               ACAACGCTGCAGGCCTGCGTCCGGGGCTTCTTGGTCCGACGCCAGTTCCAGAGTCTTCGA
GCTGAGTATGAGGCTGTTGTACAAGAGATCGAGGGTGATCTGGGCACACTTCAGTGGACC
AGGGGCTGGATTCCCAGACCTCAATTTCTCCCAAAGAAGGCAAAATCCCATCAGACCTGG
AAAGCTGGAGAAAGAGTACCAGATCCAGAGCAGGAACTGTGGAGCCGCTTCCCCTGTAAA
GAGCCTGAGAAAGAGGCCATCTGGGAGGGGATGATACTGAAGAAGTCTGGAGAGAGCTCA
GCAAACTCAAGCAGTTTTCCCTGCAGAGATGAAAGCCCATGGCCTCAGAATGAGCAGAGC
ACGAAGACCAGGAAACTGAGTCAAGGGGAGACCAGAGACATGTCAAAGATGGAGAATCCA
GAAGCTGCAGGTCCAGGACTGTCCCACAGCCAGACTGAGCTCCAGGAGCTCCAGTATCAG
CGCAGCCACTTGGCCATGGAGCTGCTGTGGTTACAGCAGGCCATCAATAGCCGTAAGGAG
TACCTGATTCTCAAACAAACACTGAACTCTTCAGAGGTGAACCAGACCAGAGACAAGCCC
TGCATGTGCCCAGACCATGGGGGTCAGGGCTGTGAGAAAGGAGAGTCACAACCAGTCCCA
CCACTGGAAGACCAGTCCTCTAGAGCCAGGCCCACTGGAGAGCCAGGCCATGTGGATGAC
TCCTGCTGGAGACTCAAATCACAGCCCCACAGATCCCCAGAAGGACTGGCCACTACAGAC
AAAACCACTGCTGGGGCCAAGTACAGGGACTCAGGCTACAGGCGGACGGGACCACAGCTG
CCCATACTATCAGATAACCAGGCCATAGGGAAGAGGTTCAACAAAGAGCCAGACGCTGGG
GAACAGATCTTTGGAGGGACCTGCCTGCAACTAACAGAACTTCTAGAGAACCAGACCCCC
AAAGGCCTCAAACCTAGGGGCTACTGTTCTGGAAAAGCCAGGACACAGCTGCCCACACTC
TGCGAGGACCCATACATTGAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACGCTGCAGGCCTGCGTCCGGGGCTTCTTGGTCCGACGCCAGTTCCAGAGTCTTCGA
GCTGAGTATGAGGCTGTTGTACAAGAGATCGAGGGTGATCTGGGCACACTTCAGTGGACC
AGGGGCTGGATTCCCAGACCTCAATTTCTCCCAAAGAAGGCAAAATCCCATCAGACCTGG
AAAGCTGGAGAAAGAGTACCAGATCCAGAGCAGGAACTGTGGAGCCGCTTCCCCTGTAAA
GAGCCTGAGAAAGAGGCCATCTGGGAGGGGATGATACTGAAGAAGTCTGGAGAGAGCTCA
GCAAACTCAAGCAGTTTTCCCTGCAGAGATGAAAGCCCATGGCCTCAGAATGAGCAGAGC
ACGAAGACCAGGAAACTGAGTCAAGGGGAGACCAGAGACATGTCAAAGATGGAGAATCCA
GAAGCTGCAGGTCCAGGACTGTCCCACAGCCAGACTGAGCTCCAGGAGCTCCAGTATCAG
CGCAGCCACTTGGCCATGGAGCTGCTGTGGTTACAGCAGGCCATCAATAGCCGTAAGGAG
TACCTGATTCTCAAACAAACACTGAACTCTTCAGAGGTGAACCAGACCAGAGACAAGCCC
TGCATGTGCCCAGACCATGGGGGTCAGGGCTGTGAGAAAGGAGAGTCACAACCAGTCCCA
CCACTGGAAGACCAGTCCTCTAGAGCCAGGCCCACTGGAGAGCCAGGCCATGTGGATGAC
TCCTGCTGGAGACTCAAATCACAGCCCCACAGATCCCCAGAAGGACTGGCCACTACAGAC
AAAACCACTGCTGGGGCCAAGTACAGGGACTCAGGCTACAGGCGGACGGGACCACAGCTG
CCCATACTATCAGATAACCAGGCCATAGGGAAGAGGTTCAACAAAGAGCCAGACGCTGGG
GAACAGATCTTTGGAGGGACCTGCCTGCAACTAACAGAACTTCTAGAGAACCAGACCCCC
AAAGGCCTCAAACCTAGGGGCTACTGTTCTGGAAAAGCCAGGACACAGCTGCCCACACTC
TGCGAGGACCCATACATTGAAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868548|ref|XP_584250.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868548|ref|XP_584250.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               155-310, - strand, RNAz p=0.854441

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-310, - strand, RNAz p=0.854441

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               155-421, gnl|bosTau2|chr2 (73500567-73500833)
               

               
               155-421, gnl|Hg17|chr1 (32341201-32341455)
               

               
               155-421, gnl|Mm7|chr4 (129062568-129062311)
               


               
               759-1042, gnl|bosTau2|chr14 (30790543-30790810)
               

               
               759-1042, gnl|Hg17|chr1 (32342158-32342432)
               

               
               759-1042, gnl|Mm7|chr4 (129061619-129061344)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-421, gnl|bosTau2|chr2 (73500567-73500833)
               

               
               155-421, gnl|Hg17|chr1 (32341201-32341455)
               

               
               155-421, gnl|Mm7|chr4 (129062568-129062311)
               


               
               759-1042, gnl|bosTau2|chr14 (30790543-30790810)
               

               
               759-1042, gnl|Hg17|chr1 (32342158-32342432)
               

               
               759-1042, gnl|Mm7|chr4 (129061619-129061344)

	155-421, gnl\|bosTau2\|chr2 (73500567-73500833)
	155-421, gnl\|Hg17\|chr1 (32341201-32341455)
	155-421, gnl\|Mm7\|chr4 (129062568-129062311)

	759-1042, gnl\|bosTau2\|chr14 (30790543-30790810)
	759-1042, gnl\|Hg17\|chr1 (32342158-32342432)
	759-1042, gnl\|Mm7\|chr4 (129061619-129061344)