Non-Coding RNA Search

Ss1.1-Pig1-74B18.5

Sequence:


               
               TTTAACTTGTTTATTTTCCACATAAGAGCTGATACCTGACACCTGAGAAAAGAAGACACG
ATCCCAGTGGACCCGGGGGCTCCAGTCTGAAGGCGCCCAGCTACATGGCCTGGCGGGACA
CCTGCCATGCTCACACCCAGGGAAGGGTTCATCCAGGCAGGAATGCGCTCCATGAGCCAG
CTGGAACAGTGCGTGTGGGCTCCAGGCTGGGAGGCAAGTGTTTCTAAACTGTGGTGGGAC
AGCAGCCCCTGGTGACTGCAAGGGAGGCTGAGGAAGTCCAGAGCCAGGCACCTACGCATC
AGGGTCCAGCTGGCAGCACTGGGCCTCCAGCACACCGCGGAAGGCCTGGAAGCGGTGGTT
GAGATCAGGCCGGGCATGGATGCGGAAGTGGGTGCCCAGTGCACCATCGGGCGAGGGTGC
CCCATAGAAGACGCGTCGCACACGCGAGTGCACCAAGGCCATAGCGCACATGGCACAGGG
CTCACGGGTAACATACAGGTCATAGCCGGTGCATACATAGGGAAGGCCATCCATGTCCTC
TTCCAGTTTGCGCACAGAGCCGACACGGACACTCTCGGGGGCAGCAGCTGGGGCAAAGGA
GCAGGCAGGGTGGTGTGTGAGGTCATAGGTGCCACGGCCCTGGCCCTGCGCCACCAGGTC
AATGCATACCATGGCGGCATGCAGTAGGGGGGTGGCCGTGCCACTACAGTCGTGGCCTGT
GGCCAGCACACGGCCCGAGGCCGGGTCCACCACCACTGCCCCCACAGCCCTCAGGCCCCT
GGAGGCCGCCTGCTGTGCCGCCCACACAGCCCGTTCCATGTGGCCCTGCATCACAGCTCG
CTCCTGCGCTGAGAAGAGCTGCCCGGCCAGGGCTCGGGTCACCTGCCTGTCCTCATGGAA
GGACGTGGGCCAGTGGGTGCGCGCCTCCTCAAATTGGTCCCTGGTCAGCGGCGGCCGGGC
AGGCACGGGCACGAGAAAGGGCTGACCCAGGCCGCAGGGGTCCACGGCTGGTGTCGGAAG
GAGCTCGGCCAGCGATCGTGTGCCTGCGGCTGGCCCCGCCAGGCATAGCAGCATCTCCAG
CGTGTGTGGGCGGCTAGGGTCTCGGCTGGGACGCACTCTTTTAAGATGAGGCTGTGCAGG
CAGCGGGTGGACAGCTGACACCTCCTTCAGGAGGCGTGAGGTCTGGCGCTTGTCCAGGAC
AGGTGCAGCGTAGGCCAGTACCAGCTCCACGTCCCCCGACTGCTGCTCAGACAGGACTGG
GAGGGCTTCCCACGATGCCAGCTCTCCCTCAGGGCTCCCGGCCTTCACATCCCCACGCAG
CTCCATGATGCCCAGGGCGGGGTCCATCCTCGGTATGGTTCTGACTGAGGATACCGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAACTTGTTTATTTTCCACATAAGAGCTGATACCTGACACCTGAGAAAAGAAGACACG
ATCCCAGTGGACCCGGGGGCTCCAGTCTGAAGGCGCCCAGCTACATGGCCTGGCGGGACA
CCTGCCATGCTCACACCCAGGGAAGGGTTCATCCAGGCAGGAATGCGCTCCATGAGCCAG
CTGGAACAGTGCGTGTGGGCTCCAGGCTGGGAGGCAAGTGTTTCTAAACTGTGGTGGGAC
AGCAGCCCCTGGTGACTGCAAGGGAGGCTGAGGAAGTCCAGAGCCAGGCACCTACGCATC
AGGGTCCAGCTGGCAGCACTGGGCCTCCAGCACACCGCGGAAGGCCTGGAAGCGGTGGTT
GAGATCAGGCCGGGCATGGATGCGGAAGTGGGTGCCCAGTGCACCATCGGGCGAGGGTGC
CCCATAGAAGACGCGTCGCACACGCGAGTGCACCAAGGCCATAGCGCACATGGCACAGGG
CTCACGGGTAACATACAGGTCATAGCCGGTGCATACATAGGGAAGGCCATCCATGTCCTC
TTCCAGTTTGCGCACAGAGCCGACACGGACACTCTCGGGGGCAGCAGCTGGGGCAAAGGA
GCAGGCAGGGTGGTGTGTGAGGTCATAGGTGCCACGGCCCTGGCCCTGCGCCACCAGGTC
AATGCATACCATGGCGGCATGCAGTAGGGGGGTGGCCGTGCCACTACAGTCGTGGCCTGT
GGCCAGCACACGGCCCGAGGCCGGGTCCACCACCACTGCCCCCACAGCCCTCAGGCCCCT
GGAGGCCGCCTGCTGTGCCGCCCACACAGCCCGTTCCATGTGGCCCTGCATCACAGCTCG
CTCCTGCGCTGAGAAGAGCTGCCCGGCCAGGGCTCGGGTCACCTGCCTGTCCTCATGGAA
GGACGTGGGCCAGTGGGTGCGCGCCTCCTCAAATTGGTCCCTGGTCAGCGGCGGCCGGGC
AGGCACGGGCACGAGAAAGGGCTGACCCAGGCCGCAGGGGTCCACGGCTGGTGTCGGAAG
GAGCTCGGCCAGCGATCGTGTGCCTGCGGCTGGCCCCGCCAGGCATAGCAGCATCTCCAG
CGTGTGTGGGCGGCTAGGGTCTCGGCTGGGACGCACTCTTTTAAGATGAGGCTGTGCAGG
CAGCGGGTGGACAGCTGACACCTCCTTCAGGAGGCGTGAGGTCTGGCGCTTGTCCAGGAC
AGGTGCAGCGTAGGCCAGTACCAGCTCCACGTCCCCCGACTGCTGCTCAGACAGGACTGG
GAGGGCTTCCCACGATGCCAGCTCTCCCTCAGGGCTCCCGGCCTTCACATCCCCACGCAG
CTCCATGATGCCCAGGGCGGGGTCCATCCTCGGTATGGTTCTGACTGAGGATACCGGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57102218|ref|XP_542193.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57102218|ref|XP_542193.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1138-1257, + strand, RNAz p=0.635992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1138-1257, + strand, RNAz p=0.635992

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               299-1370, gnl|bosTau2|chr7 (28141493-28142546)
               

               
               299-1370, gnl|Hg17|chr19 (1864143-1863074)
               

               
               299-1370, gnl|Mm7|chr10 (80396170-80395106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               299-1370, gnl|bosTau2|chr7 (28141493-28142546)
               

               
               299-1370, gnl|Hg17|chr19 (1864143-1863074)
               

               
               299-1370, gnl|Mm7|chr10 (80396170-80395106)

	299-1370, gnl\|bosTau2\|chr7 (28141493-28142546)
	299-1370, gnl\|Hg17\|chr19 (1864143-1863074)
	299-1370, gnl\|Mm7\|chr10 (80396170-80395106)