Ss1.1-Pig1-75L04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCCCTCCCCCTGGGGGCTGAGTGCTTGGAAAGGCTTGACCCCCTCTTCCTGGTCTGCA TCGCCAAGGAGTACTTGCTCTTCTGCCCCAAGCAGCCCCGGTCTCCAGGCCAGATCGTGT CTCCGCTTCTCAAACAAGTCACTGCAATCTTGAATCCTGTAGTCAAGGTAGCACCAGCTC TGATCGACCCGCTGTATGTGATGGCCCAGGTCAAGTATCTCTCAGGAGAGCTTGAGAATG CCCAGAGCACCCTGCAGCGTTGTCTGGAGCTGGACCCCACCTCCGTGGACGCCCACCTCC TTGTGTCCCAGATCTACCTGACTCAGGGCAATTTTGCCATGTGCTCCCACTGCTTGGAGC TGGGCATCAGCCACAACTTCCAGGTCCGAGACCACCCCCTCTACCATTTCATCAAGGCCA GGGCCCTCAACAAGTCTGGGGACTACCCAGAAGCCATAAAGGCATTGAAGATGATCATAA ATGTACCAACCCTGAAGATGGAAGAAAACAAGAAATTCCGAGGGCCCTCAGTGCAGCCCA GCGAGCGGGTGTCCATCTTACTGGAACTGGTGGATGCCCTCCGGATGAACGGGGAGCTGC ACGAGGCCACCAAGATCATGCAGGACGCCATCAACGAGTTCAGCGGCACACCGGAGGAGA TCCGCATCACCATCGCCAACGTGGACTTGGTCCTGAGCAAAGGGAACGTGGACCTGGCAC TGAGCATGCTGAGGAACATCACGCCCAAGCAGCCCTACTACATGGAGGCCAAGGAGAAGA TGGCCAGCATCTACCTGCAGACCCACAAGGACATCCGCCTCTACATCGGGTGTTACCGGG AACTCTGTGAACATCTGCCTGGGCCCCAAACTAGCTTGCTACTGGGTGATGCTTTCATGA ACATTCAGGAGCCAATTAATTATTATGAGGCTGCCCAGAAGATCAGCGGACAAGACTTTC TGTGCTGTGATCTGGCTGAACTGTTCCTGAAGTTAAAAAAGTTCAGCAAAGCAGAAAAAG TTTTGAAGCAGGCACTGGATCATGACTTCGTCAAAGACATCCCGTCCATGATGAATGATG TCAAGTGCTTACTCTTGCTGGCAAAGGTTTATAACATCCATAAAAAGGAAGATGTGATGG AAACTTTGAACAAGGCCATGGACCTTCAGTCTCGGATCCTGAAGCGTGTTCCCCTGGAGC AACCGGAAATGATCCCCTCCCAGAAGCAACGGCAGCCTCCATCTGCATCCACTTTGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCCCTCCCCCTGGGGGCTGAGTGCTTGGAAAGGCTTGACCCCCTCTTCCTGGTCTGCA TCGCCAAGGAGTACTTGCTCTTCTGCCCCAAGCAGCCCCGGTCTCCAGGCCAGATCGTGT CTCCGCTTCTCAAACAAGTCACTGCAATCTTGAATCCTGTAGTCAAGGTAGCACCAGCTC TGATCGACCCGCTGTATGTGATGGCCCAGGTCAAGTATCTCTCAGGAGAGCTTGAGAATG CCCAGAGCACCCTGCAGCGTTGTCTGGAGCTGGACCCCACCTCCGTGGACGCCCACCTCC TTGTGTCCCAGATCTACCTGACTCAGGGCAATTTTGCCATGTGCTCCCACTGCTTGGAGC TGGGCATCAGCCACAACTTCCAGGTCCGAGACCACCCCCTCTACCATTTCATCAAGGCCA GGGCCCTCAACAAGTCTGGGGACTACCCAGAAGCCATAAAGGCATTGAAGATGATCATAA ATGTACCAACCCTGAAGATGGAAGAAAACAAGAAATTCCGAGGGCCCTCAGTGCAGCCCA GCGAGCGGGTGTCCATCTTACTGGAACTGGTGGATGCCCTCCGGATGAACGGGGAGCTGC ACGAGGCCACCAAGATCATGCAGGACGCCATCAACGAGTTCAGCGGCACACCGGAGGAGA TCCGCATCACCATCGCCAACGTGGACTTGGTCCTGAGCAAAGGGAACGTGGACCTGGCAC TGAGCATGCTGAGGAACATCACGCCCAAGCAGCCCTACTACATGGAGGCCAAGGAGAAGA TGGCCAGCATCTACCTGCAGACCCACAAGGACATCCGCCTCTACATCGGGTGTTACCGGG AACTCTGTGAACATCTGCCTGGGCCCCAAACTAGCTTGCTACTGGGTGATGCTTTCATGA ACATTCAGGAGCCAATTAATTATTATGAGGCTGCCCAGAAGATCAGCGGACAAGACTTTC TGTGCTGTGATCTGGCTGAACTGTTCCTGAAGTTAAAAAAGTTCAGCAAAGCAGAAAAAG TTTTGAAGCAGGCACTGGATCATGACTTCGTCAAAGACATCCCGTCCATGATGAATGATG TCAAGTGCTTACTCTTGCTGGCAAAGGTTTATAACATCCATAAAAAGGAAGATGTGATGG AAACTTTGAACAAGGCCATGGACCTTCAGTCTCGGATCCTGAAGCGTGTTCCCCTGGAGC AACCGGAAATGATCCCCTCCCAGAAGCAACGGCAGCCTCCATCTGCATCCACTTTGGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 263-382, - strand, RNAz p=0.80047 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 263-382, - strand, RNAz p=0.80047 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 224-385, gnl|bosTau2|chr22 (9874577-9874738) | |
| 224-385, gnl|Hg17|chr3 (39144824-39144985) | |
| 224-385, gnl|Mm7|chr9 (119650049-119650210) | |
| 599-839, gnl|bosTau2|chr22 (9876060-9876300) | |
| 599-839, gnl|canFam2|chr23 (11814075-11814338) | |
| 599-839, gnl|canFam2|chr36 (14065206-14065408) | |
| 599-839, gnl|danRer3|chr24 (32897480-32897226) | |
| 599-839, gnl|danRer3|chrUn (48673871-48673677) | |
| 599-839, gnl|dasNov1|scaffold_36107 (8295-8555) | |
| 599-839, gnl|dasNov1|scaffold_36107 (8497-8298) | |
| 599-839, gnl|echTel1|scaffold_299997 (3607-3406) | |
| 599-839, gnl|echTel1|scaffold_309630 (49081-48817) | |
| 599-839, gnl|fr1|chrUn (6937026-6937289) | |
| 599-839, gnl|fr1|chrUn (6937229-6937031) | |
| 599-839, gnl|galGal2|chr7 (20455825-20455617) | |
| 599-839, gnl|hg17|chr2 (166597273-166597474) | |
| 599-839, gnl|hg17|chr3 (39145549-39145812) | |
| 599-839, gnl|Hg17|chr3 (39145566-39145806) | |
| 599-839, gnl|loxAfr1|scaffold_33833 (4-263) | |
| 599-839, gnl|loxAfr1|scaffold_33833 (205-4) | |
| 599-839, gnl|mm7|chr2 (66156510-66156711) | |
| 599-839, gnl|mm7|chr9 (119652710-119652974) | |
| 599-839, gnl|Mm7|chr9 (119652728-119652968) | |
| 599-839, gnl|monDom2|scaffold_128 (2763208-2763458) | |
| 599-839, gnl|monDom2|scaffold_2 (63023500-63023699) | |
| 599-839, gnl|oryCun1|scaffold_195389 (8446-8183) | |
| 599-839, gnl|oryCun1|scaffold_213418 (148607-148808) | |
| 599-839, gnl|panTro1|chr13 (55988793-55988994) | |
| 599-839, gnl|panTro1|chr2 (40256369-40256632) | |
| 599-839, gnl|rheMac2|chr12 (29559282-29559483) | |
| 599-839, gnl|rheMac2|chr2 (97391231-97390968) | |
| 599-839, gnl|rn3|chr3 (48084221-48084429) | |
| 599-839, gnl|rn3|chr8 (124938791-124939057) | |
| 599-839, gnl|tetNig1|chr2 (11766607-11766350) | |
| 599-839, gnl|tetNig1|chr2 (11766409-11766607) | |
| 599-839, gnl|xenTro1|scaffold_204 (306417-306606) | |
| 599-839, gnl|xenTro1|scaffold_647 (566476-566217) | |
| 1153-1260, gnl|bosTau2|chr22 (9879388-9879496) | |
| 1153-1260, gnl|canFam2|chr23 (11817397-11817639) | |
| 1153-1260, gnl|danRer3|chrUn (48681851-48682062) | |
| 1153-1260, gnl|echTel1|scaffold_309630 (45179-44971) | |
| 1153-1260, gnl|fr1|chrUn (6938696-6938911) | |
| 1153-1260, gnl|hg17|chr3 (39149509-39149753) | |
| 1153-1260, gnl|Hg17|chr3 (39149545-39149653) | |
| 1153-1260, gnl|loxAfr1|scaffold_33833 (8067-8284) | |
| 1153-1260, gnl|mm7|chr9 (119657620-119657856) | |
| 1153-1260, gnl|Mm7|chr9 (119657648-119657756) | |
| 1153-1260, gnl|oryCun1|scaffold_195389 (4473-4229) | |
| 1153-1260, gnl|panTro1|chr2 (40260331-40260575) | |
| 1153-1260, gnl|rheMac2|chr2 (97387247-97387003) | |
| 1153-1260, gnl|rn3|chr8 (124943852-124944085) | |
| 1153-1260, gnl|tetNig1|chr2 (11764897-11764699) | |
| 1153-1260, gnl|xenTro1|scaffold_647 (560770-560550) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 224-385, gnl|bosTau2|chr22 (9874577-9874738) | |
| 224-385, gnl|Hg17|chr3 (39144824-39144985) | |
| 224-385, gnl|Mm7|chr9 (119650049-119650210) | |
| 599-839, gnl|bosTau2|chr22 (9876060-9876300) | |
| 599-839, gnl|canFam2|chr23 (11814075-11814338) | |
| 599-839, gnl|canFam2|chr36 (14065206-14065408) | |
| 599-839, gnl|danRer3|chr24 (32897480-32897226) | |
| 599-839, gnl|danRer3|chrUn (48673871-48673677) | |
| 599-839, gnl|dasNov1|scaffold_36107 (8295-8555) | |
| 599-839, gnl|dasNov1|scaffold_36107 (8497-8298) | |
| 599-839, gnl|echTel1|scaffold_299997 (3607-3406) | |
| 599-839, gnl|echTel1|scaffold_309630 (49081-48817) | |
| 599-839, gnl|fr1|chrUn (6937026-6937289) | |
| 599-839, gnl|fr1|chrUn (6937229-6937031) | |
| 599-839, gnl|galGal2|chr7 (20455825-20455617) | |
| 599-839, gnl|hg17|chr2 (166597273-166597474) | |
| 599-839, gnl|hg17|chr3 (39145549-39145812) | |
| 599-839, gnl|Hg17|chr3 (39145566-39145806) | |
| 599-839, gnl|loxAfr1|scaffold_33833 (4-263) | |
| 599-839, gnl|loxAfr1|scaffold_33833 (205-4) | |
| 599-839, gnl|mm7|chr2 (66156510-66156711) | |
| 599-839, gnl|mm7|chr9 (119652710-119652974) | |
| 599-839, gnl|Mm7|chr9 (119652728-119652968) | |
| 599-839, gnl|monDom2|scaffold_128 (2763208-2763458) | |
| 599-839, gnl|monDom2|scaffold_2 (63023500-63023699) | |
| 599-839, gnl|oryCun1|scaffold_195389 (8446-8183) | |
| 599-839, gnl|oryCun1|scaffold_213418 (148607-148808) | |
| 599-839, gnl|panTro1|chr13 (55988793-55988994) | |
| 599-839, gnl|panTro1|chr2 (40256369-40256632) | |
| 599-839, gnl|rheMac2|chr12 (29559282-29559483) | |
| 599-839, gnl|rheMac2|chr2 (97391231-97390968) | |
| 599-839, gnl|rn3|chr3 (48084221-48084429) | |
| 599-839, gnl|rn3|chr8 (124938791-124939057) | |
| 599-839, gnl|tetNig1|chr2 (11766607-11766350) | |
| 599-839, gnl|tetNig1|chr2 (11766409-11766607) | |
| 599-839, gnl|xenTro1|scaffold_204 (306417-306606) | |
| 599-839, gnl|xenTro1|scaffold_647 (566476-566217) | |
| 1153-1260, gnl|bosTau2|chr22 (9879388-9879496) | |
| 1153-1260, gnl|canFam2|chr23 (11817397-11817639) | |
| 1153-1260, gnl|danRer3|chrUn (48681851-48682062) | |
| 1153-1260, gnl|echTel1|scaffold_309630 (45179-44971) | |
| 1153-1260, gnl|fr1|chrUn (6938696-6938911) | |
| 1153-1260, gnl|hg17|chr3 (39149509-39149753) | |
| 1153-1260, gnl|Hg17|chr3 (39149545-39149653) | |
| 1153-1260, gnl|loxAfr1|scaffold_33833 (8067-8284) | |
| 1153-1260, gnl|mm7|chr9 (119657620-119657856) | |
| 1153-1260, gnl|Mm7|chr9 (119657648-119657756) | |
| 1153-1260, gnl|oryCun1|scaffold_195389 (4473-4229) | |
| 1153-1260, gnl|panTro1|chr2 (40260331-40260575) | |
| 1153-1260, gnl|rheMac2|chr2 (97387247-97387003) | |
| 1153-1260, gnl|rn3|chr8 (124943852-124944085) | |
| 1153-1260, gnl|tetNig1|chr2 (11764897-11764699) | |
| 1153-1260, gnl|xenTro1|scaffold_647 (560770-560550) |