Ss1.1-Pig1-75M11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGAGAAGACAAAAACAGGGTGATCTTCACAACTATTGTTTTATACAAGTGATGAAAAT ATACCTTGCCTTGTTTCGAGGCGAATTCCTATTTATAAAGATGTTGTCTTTTTTTCCTCC ACAAAACATATAACATTGCTTACCTGGAAGGTGAATTTTTATTCTGTTTTTAAGAAGAGA CGCTTTCCGGTTGCAGGTGACTGATATAGGTAGGGTTCTGATTGTACTACACATAATCCA TGTTTTTGACTGTAGGTTGCAAAGTTGAACAAAAGATGATTGCTCTCTAATATATCTGGA ACTGATTCATGAGAAGAGCTAAAATAAGATTATCTTGGAAATGAATCTAATTTATTCAGA AAGAAAAGTTTGAATCGGAAGCCTCTAGAAGTAATATGTAAATGCTCAGTCATAGATGCA ATGCTTTTGTTGTTGTTGTTGTTGTGTAAAAAGTTTTTCCCAGTGATTTCACTGAACTAG TTCCCTTTAATAGAAAGGGTCAGCTAAAATTCAGTATTCCTGGGTACATTTTTGGAATCA AAAAGTAAGTACTGAAGAGAAGACCAAGACATTAAAATGGTTGTGTGATGCAGGAAAGAA GATTGAGAAAAGACCAAAACACTTCTCCGCCAACACTCCATCCTTTTTTGGTTTTTTGTT TTTTTTTTAAACTTTAGGGCTATCAGGGAAATTTCTTCCCTCTTCCTCCTTCATAAACGA AAAGAACCCTAGGCAGCTACGTTTCCCTCCAGTCATTTCAGGTTATGTGACGGCGAGGAC ACGTGATCACTTCTCTTCTTTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGAGAAGACAAAAACAGGGTGATCTTCACAACTATTGTTTTATACAAGTGATGAAAAT ATACCTTGCCTTGTTTCGAGGCGAATTCCTATTTATAAAGATGTTGTCTTTTTTTCCTCC ACAAAACATATAACATTGCTTACCTGGAAGGTGAATTTTTATTCTGTTTTTAAGAAGAGA CGCTTTCCGGTTGCAGGTGACTGATATAGGTAGGGTTCTGATTGTACTACACATAATCCA TGTTTTTGACTGTAGGTTGCAAAGTTGAACAAAAGATGATTGCTCTCTAATATATCTGGA ACTGATTCATGAGAAGAGCTAAAATAAGATTATCTTGGAAATGAATCTAATTTATTCAGA AAGAAAAGTTTGAATCGGAAGCCTCTAGAAGTAATATGTAAATGCTCAGTCATAGATGCA ATGCTTTTGTTGTTGTTGTTGTTGTGTAAAAAGTTTTTCCCAGTGATTTCACTGAACTAG TTCCCTTTAATAGAAAGGGTCAGCTAAAATTCAGTATTCCTGGGTACATTTTTGGAATCA AAAAGTAAGTACTGAAGAGAAGACCAAGACATTAAAATGGTTGTGTGATGCAGGAAAGAA GATTGAGAAAAGACCAAAACACTTCTCCGCCAACACTCCATCCTTTTTTGGTTTTTTGTT TTTTTTTTAAACTTTAGGGCTATCAGGGAAATTTCTTCCCTCTTCCTCCTTCATAAACGA AAAGAACCCTAGGCAGCTACGTTTCCCTCCAGTCATTTCAGGTTATGTGACGGCGAGGAC ACGTGATCACTTCTCTTCTTTTTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-117, + strand, RNAz p=0.939281 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-117, + strand, RNAz p=0.939281 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_022832, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-399, gnl|bosTau2|chr8 (37915631-37915235) | |
| 1-399, gnl|canFam2|chr13 (48316935-48316577) | |
| 1-399, gnl|canFam2|chr13 (48316447-48316811) | |
| 1-399, gnl|echTel1|scaffold_216401 (5931-5544) | |
| 1-399, gnl|echTel1|scaffold_216401 (5406-5797) | |
| 1-399, gnl|hg17|chr16 (84591452-84591815) | |
| 1-399, gnl|hg17|chr4 (53302728-53303079) | |
| 1-399, gnl|Hg17|chr4 (53303118-53302727) | |
| 1-399, gnl|loxAfr1|scaffold_44216 (7517-7872) | |
| 1-399, gnl|loxAfr1|scaffold_44216 (8015-7635) | |
| 1-399, gnl|mm7|chr5 (73418676-73418328) | |
| 1-399, gnl|mm7|chr5 (73418214-73418558) | |
| 1-399, gnl|Mm7|chr5 (73418596-73418199) | |
| 1-399, gnl|monDom2|scaffold_26 (16238446-16238852) | |
| 1-399, gnl|oryCun1|scaffold_176443 (10565-10893) | |
| 1-399, gnl|oryCun1|scaffold_183997 (49313-49664) | |
| 1-399, gnl|panTro1|chr18 (79513722-79514085) | |
| 1-399, gnl|panTro1|chr3 (93400088-93399737) | |
| 1-399, gnl|rheMac2|chr5 (76799815-76800164) | |
| 1-399, gnl|rheMac2|chr5 (76800297-76799948) | |
| 1-399, gnl|rn3|chr14 (36610022-36610368) | |
| 1-399, gnl|rn3|chr14 (36610485-36610140) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-399, gnl|bosTau2|chr8 (37915631-37915235) | |
| 1-399, gnl|canFam2|chr13 (48316935-48316577) | |
| 1-399, gnl|canFam2|chr13 (48316447-48316811) | |
| 1-399, gnl|echTel1|scaffold_216401 (5931-5544) | |
| 1-399, gnl|echTel1|scaffold_216401 (5406-5797) | |
| 1-399, gnl|hg17|chr16 (84591452-84591815) | |
| 1-399, gnl|hg17|chr4 (53302728-53303079) | |
| 1-399, gnl|Hg17|chr4 (53303118-53302727) | |
| 1-399, gnl|loxAfr1|scaffold_44216 (7517-7872) | |
| 1-399, gnl|loxAfr1|scaffold_44216 (8015-7635) | |
| 1-399, gnl|mm7|chr5 (73418676-73418328) | |
| 1-399, gnl|mm7|chr5 (73418214-73418558) | |
| 1-399, gnl|Mm7|chr5 (73418596-73418199) | |
| 1-399, gnl|monDom2|scaffold_26 (16238446-16238852) | |
| 1-399, gnl|oryCun1|scaffold_176443 (10565-10893) | |
| 1-399, gnl|oryCun1|scaffold_183997 (49313-49664) | |
| 1-399, gnl|panTro1|chr18 (79513722-79514085) | |
| 1-399, gnl|panTro1|chr3 (93400088-93399737) | |
| 1-399, gnl|rheMac2|chr5 (76799815-76800164) | |
| 1-399, gnl|rheMac2|chr5 (76800297-76799948) | |
| 1-399, gnl|rn3|chr14 (36610022-36610368) | |
| 1-399, gnl|rn3|chr14 (36610485-36610140) |