Ss1.1-Pig1-75N15.5
|
GGGGGGGGTGGGGGGGAGGAACATGGCGCAAGCTCTGTCTGAAGAGGAGTTTCAGCGGAT
GCAGGCTCAGCTCCTAGAACTCCGGACAAACAACTACCAGCTTTCGGATGAACTACGCAA
GAATGGTGTTGAACTCATCAGTCTTCGACAGAAGGTCGCCTACCTGGATAAGGAGTTCAG
CAAAGCTCAGAAGGCACTGAGCAAGAGTAAGAAAGCTCAGGAATTCGAGGGGCTGCTGAG
TGAAAATGAGATGCTACAGGCAAAGCTGCACAGCCAGGAGGAGGACTTCCGTTTGCAGAA
CAGCACGCTTATGGCCGAGTTCAGCAAGCTCTGCAGCCAGATGGAACAGCTGGAGCGGGA
GAACCAGCAACTGAAGGATGGAGCTGCTGGGTCAGGGGCTGCCCAAGCTGGGAGCCTTGT
GGACGGAGAGCTGCTGAGACTGCAGGCGGAGAACACAGCCTTGCAGAAAAACGTGGCAGA
AGTGGAGCTGAAATGGGCGATGGAGAAGGAGGAAAAGAGACTGCTCTGGGAGCAACTGCA
AGGCTTGGAGACCTTGAAGCAGGCCGAAACATCCAGGCTGCAGGAAGAACTTGCTAAGCT
CTCCGAGAAACTCAAAAAGAAACAAGAAAGTTTTTGCCGCCTGCAGACCGAANAGGAGAT
ACTATTCAATGATAGCCGGAACAAGATTGAGGAGTTACAACAGCGGAAAGAAGCTGATCT
CAAAGCCCAGTTGGCCCGAACTCAAAAGCTGCAGCAGGAACTTGAGGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGGGGGGTGGGGGGGAGGAACATGGCGCAAGCTCTGTCTGAAGAGGAGTTTCAGCGGAT
GCAGGCTCAGCTCCTAGAACTCCGGACAAACAACTACCAGCTTTCGGATGAACTACGCAA
GAATGGTGTTGAACTCATCAGTCTTCGACAGAAGGTCGCCTACCTGGATAAGGAGTTCAG
CAAAGCTCAGAAGGCACTGAGCAAGAGTAAGAAAGCTCAGGAATTCGAGGGGCTGCTGAG
TGAAAATGAGATGCTACAGGCAAAGCTGCACAGCCAGGAGGAGGACTTCCGTTTGCAGAA
CAGCACGCTTATGGCCGAGTTCAGCAAGCTCTGCAGCCAGATGGAACAGCTGGAGCGGGA
GAACCAGCAACTGAAGGATGGAGCTGCTGGGTCAGGGGCTGCCCAAGCTGGGAGCCTTGT
GGACGGAGAGCTGCTGAGACTGCAGGCGGAGAACACAGCCTTGCAGAAAAACGTGGCAGA
AGTGGAGCTGAAATGGGCGATGGAGAAGGAGGAAAAGAGACTGCTCTGGGAGCAACTGCA
AGGCTTGGAGACCTTGAAGCAGGCCGAAACATCCAGGCTGCAGGAAGAACTTGCTAAGCT
CTCCGAGAAACTCAAAAAGAAACAAGAAAGTTTTTGCCGCCTGCAGACCGAANAGGAGAT
ACTATTCAATGATAGCCGGAACAAGATTGAGGAGTTACAACAGCGGAAAGAAGCTGATCT
CAAAGCCCAGTTGGCCCGAACTCAAAAGCTGCAGCAGGAACTTGAGGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
327-484, gnl|bosTau2|chrX (26143864-26144021) |
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327-484, gnl|canFam2|chrX (42087505-42087706) |
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327-484, gnl|danRer3|chr19 (66704594-66704778) |
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327-484, gnl|echTel1|scaffold_251406 (3378-3565) |
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327-484, gnl|hg17|chrX (48606070-48606272) |
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327-484, gnl|Hg17|chrX (48606240-48606083) |
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327-484, gnl|loxAfr1|scaffold_158670 (454-652) |
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327-484, gnl|mm7|chrX (6232597-6232410) |
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327-484, gnl|Mm7|chrX (6232438-6232583) |
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327-484, gnl|monDom2|scaffold_134 (177424-177245) |
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327-484, gnl|oryCun1|scaffold_190599 (12504-12292) |
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327-484, gnl|panTro1|chrUn_random (232868770-232868568) |
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327-484, gnl|rheMac2|chrX (46852628-46852830) |
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327-484, gnl|rn3|chrX (26787173-26787366) |
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327-484, gnl|tetNig1|chrUn_random (97034887-97034693) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
327-484, gnl|bosTau2|chrX (26143864-26144021) |
|
327-484, gnl|canFam2|chrX (42087505-42087706) |
|
327-484, gnl|danRer3|chr19 (66704594-66704778) |
|
327-484, gnl|echTel1|scaffold_251406 (3378-3565) |
|
327-484, gnl|hg17|chrX (48606070-48606272) |
|
327-484, gnl|Hg17|chrX (48606240-48606083) |
|
327-484, gnl|loxAfr1|scaffold_158670 (454-652) |
|
327-484, gnl|mm7|chrX (6232597-6232410) |
|
327-484, gnl|Mm7|chrX (6232438-6232583) |
|
327-484, gnl|monDom2|scaffold_134 (177424-177245) |
|
327-484, gnl|oryCun1|scaffold_190599 (12504-12292) |
|
327-484, gnl|panTro1|chrUn_random (232868770-232868568) |
|
327-484, gnl|rheMac2|chrX (46852628-46852830) |
|
327-484, gnl|rn3|chrX (26787173-26787366) |
|
327-484, gnl|tetNig1|chrUn_random (97034887-97034693) |
